Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1261 a.a., response regulator from Synechocystis sp000284455 PCC 6803

 Score =  338 bits (868), Expect = 1e-96
 Identities = 230/681 (33%), Positives = 356/681 (52%), Gaps = 44/681 (6%)

Query: 270  LEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYL 329
            ++    E+  AK+ A+EA+R+K++FLANMSHE+RTP+N VIG T   LKT LT  Q +YL
Sbjct: 506  IKAAEAEMKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTPRQREYL 565

Query: 330  QTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEIT 389
              I  S  +LL +INDILDFSK+EAGKL +E+I F+  +VL+ V  L +  A  KGLE+ 
Sbjct: 566  HKIRFSGQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELL 625

Query: 390  LKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRD 449
              ID  +PR  +GDPLR+ Q+L N   N++KFTE+G+I + V ++  RD  + L   V+D
Sbjct: 626  FDIDRNLPRHFIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQEYRDQDVVLYLAVKD 685

Query: 450  TGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGST 509
            TGIGI     A LF +F QAD+S +R +GGTGLGL I +++   MGGE+ + S   QGST
Sbjct: 686  TGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGST 745

Query: 510  FWFTLRLHTTELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTL---------VQSGLE 560
            FW  + L  + +  +    +  L  + +L+++ N  A  +++  L         V+SG E
Sbjct: 746  FWAKVCLQKSNVIPHRLVLSKDLEGKRVLVVDDNDHARLVMKDLLEQMKFVVETVESGPE 805

Query: 561  -VTYRSAIPEEQHVYDYVLLNLAPSKETNPTLVELWVQR---ALAMTHN----VIVGVPS 612
             + + +    E H +  V ++        P +  L V R   A+ + H     ++     
Sbjct: 806  ALNFLAEADRENHPHSIVFIDW-----QMPNMDGLEVARRLKAMGLNHQPSIFIVTAYGR 860

Query: 613  TELALADQLMQRYPVKCISKPLSRKKLLQT----------LAAQQPQLANTSLPKPQADK 662
             EL +  + +    V  + KP+S   L  +          LA +  Q +         +K
Sbjct: 861  EELFVKAKSLGIDDV--LVKPISPSVLFDSLARVLGDPTALAQEMRQSSGIGAEDLALEK 918

Query: 663  LPLC----VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQM 718
            L       ++ V+DN  N ++   LL++    V    +G  A+E+  +  + ++LMD+QM
Sbjct: 919  LRRIRGARILLVEDNEINQEVAAELLRDVGFNVDVAANGLIALERLNNNAYALVLMDMQM 978

Query: 719  PHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVL 778
            P MDG+ A  AI+Q   Y   P++A+TA+ M G+R+R L+AGM+D+L KPIE   L   L
Sbjct: 979  PEMDGIEATIAIRQNPRYAQLPIVAMTANVMQGDRERCLQAGMNDHLGKPIEPEELWNKL 1038

Query: 779  VHWSPHTRSKQVAKVTPPDGAAVISNALPSSPPAEEAIIDWPVALRQSANKEDLAKEMLG 838
            +HW P      +A  T  + A   S+   S P       D    LR+   K+ L  +ML 
Sbjct: 1039 LHWIP--VDSPLAPETIEESAINTSDPEISIPHIPGLNSD--DGLRRVLGKKSLYLKMLH 1094

Query: 839  MLVDYLREVETVVNTALEDEEYPASDLLHHIHKLHGSCSYSGVPRLRKICASLEQALRNG 898
              V         +  AL +++Y  ++ L   H L G     G   L++  A LE+A++  
Sbjct: 1095 KFVASQSSFLPEITQALGEKDYGFAERL--AHTLKGVAGNIGAQELQQEAAELEKAIKEQ 1152

Query: 899  ASIDELEPELFELQDEMAKVL 919
                E+E  L  L D +  ++
Sbjct: 1153 WPQPEVENLLTNLGDRLDNLI 1173