Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1236 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  311 bits (797), Expect = 2e-88
 Identities = 203/521 (38%), Positives = 284/521 (54%), Gaps = 19/521 (3%)

Query: 280  AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNL 339
            AK+ A+ A   KSEFLANMSHE+RTP+N +IG  +   +T LT  Q DYL     SA +L
Sbjct: 711  AKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAGRTSLTEQQKDYLDKASFSAQSL 770

Query: 340  LTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRG 399
            L IINDILDFSK+EAGKL LE + F   +VL+  ++L A  A EKG+E+ L         
Sbjct: 771  LRIINDILDFSKIEAGKLELEKVAFPLDKVLDHSLDLNALRAQEKGIELLLYAPVSAGIM 830

Query: 400  VVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQ 459
            + GDPLR+ QVL NL+ N++KFT+ G I++  E    RD  I L+F VRDTGIGIS  QQ
Sbjct: 831  LKGDPLRLGQVLINLLSNAVKFTQNGEIELGCEDVGERDHRITLKFWVRDTGIGISREQQ 890

Query: 460  AQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTT 519
             +LF AF+QAD S +R+YGGTGLGL I++ LVS MGG + + S    GSTF FT+     
Sbjct: 891  DKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVESEPGVGSTFSFTVSFEIA 950

Query: 520  E----LPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPEE----- 570
            E    +P+      + L     L+++ N  A  I    +     EV   S   E      
Sbjct: 951  EEAKVVPM---VVPERLASLRTLVVDDNPTALQIYSSVMRDFHFEVETASTGAEALYKLC 1007

Query: 571  QHVYDYVLLN-LAPSK---ETNPTLVELWVQRALAMTHNVIVGVPSTELALADQLMQRYP 626
            +   D VLL+ + P     +    + E+  +  LA    +I+        L   L     
Sbjct: 1008 KQQVDLVLLDWMMPEMDGIQVIDAIDEMVAEGKLAARPVIIIMTAYAAEPLKVDLDSDRV 1067

Query: 627  VKCISKPLSRKKLLQTLAAQQPQLANTSLPKPQAD---KLPLCVMAVDDNPANLKLITAL 683
               + KP     L   +       A  +LP P  +   +    V+ V+DN  N ++ T L
Sbjct: 1068 FAMLQKPFKASSLFDEIIRAFAPPAPKALPAPPVEDEGEHQGVVLLVEDNFINQQVATEL 1127

Query: 684  LQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIKQLKGYRDTPVIA 743
            L+     V    +GQ ++E    R +D ILMDIQMP MDG+TA   +++   + + P+IA
Sbjct: 1128 LKSAGYEVDVADNGQISLEMVGKRSYDAILMDIQMPVMDGLTAATELRKRYSFDELPIIA 1187

Query: 744  VTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHWSPH 784
            +TAHAM+G+R++ L AGM+ ++TKPI  + L + L HW  H
Sbjct: 1188 MTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLSHWIGH 1228