Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1763 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  342 bits (878), Expect = 1e-97
 Identities = 231/660 (35%), Positives = 366/660 (55%), Gaps = 28/660 (4%)

Query: 267  LEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQA 326
            + +L++ + EL  AK+ A  A + KS+FLANMSHE+RTP+N +IG ++  L+T+L   Q 
Sbjct: 1013 ITRLKLLSDELMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTELDRKQR 1072

Query: 327  DYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGL 386
            +Y++ IE+++ +LL IINDILDFSK+EAGKL +E +PF+   +LE++ ++ +  A +K L
Sbjct: 1073 NYVEKIERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMFSVKAADKQL 1132

Query: 387  EITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFM 446
            E+   + P +P  + GDPLR+ QVL NL+ N+IKFTERG + +S+   A  +D + L+F 
Sbjct: 1133 ELLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLSISELARDEDQVQLKFA 1192

Query: 447  VRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQ 506
            VRD+GIG++  QQA+LF++FSQAD S +R+YGGTGLGL I ++LV  MGGEI + S+   
Sbjct: 1193 VRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGEIGVDSQFGN 1252

Query: 507  GSTFWFTLRLHTTELPLNDGYNAD-SLNHRHLLLIEPNMQAAAIVQQTLVQSGLEV-TYR 564
            GSTF+FT+ +   +   N   N +  L    +L+++ N  A  I++ TL   G  V + R
Sbjct: 1253 GSTFYFTVSVKVAQ---NAQLNVEQELEGMAVLVVDDNSTARDILRTTLQSMGFSVDSAR 1309

Query: 565  SAIP--EEQHVYDYVLLNL---APSKETNPTLVELWVQRALAMTHNVIVGVPSTELALAD 619
            S +   E+    DY +  +    P  +   T   +   R L     +++          D
Sbjct: 1310 SGMEALEKCAERDYRIALIDWKMPEMDGTETAARM---RELKQPPLILMVSAHANSEFID 1366

Query: 620  QLMQRYPVKCISKPLSRKKLL----QTLAAQQPQLANTSLPKPQADKLP----LCVMAVD 671
            ++ +      I+KP+S  +LL      L  Q  +          A KL       ++ V+
Sbjct: 1367 KVEEMGINGYITKPISASRLLDGIMSALGRQGHKPVRRKAQPMDAQKLSGLKGKRILLVE 1426

Query: 672  DNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIK 731
            DN  N ++ +  L++    +    +GQ A+E+   + FD++LMD QMP MDG  A + ++
Sbjct: 1427 DNEMNQEVASEFLEQVGVVLSIADNGQIALEKLGQQSFDLVLMDCQMPVMDGYQATRELR 1486

Query: 732  QLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHW-SPHTRSKQV 790
            +L G  + PV+A+TA+AMAG+++  L AGM+D++ KPIE  IL Q L+ +  P  +  + 
Sbjct: 1487 KLPGLAELPVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVGILYQTLLQYLCPEAKGLES 1546

Query: 791  AKVTPPDGAAVISNALPSSPPAEEAIIDWPVALRQSANKEDLAKEMLGMLVDYLREVETV 850
            A         V S  L S P  E+  ID  + L Q  N E L + +L   V    +    
Sbjct: 1547 ADADAAADQEVTS--LTSWPEHEDLDIDRGLQLVQ--NSERLYRRILERFVTSQAQAGKK 1602

Query: 851  VNTALE-DEEYPASDLLHHIHKLHGSCSYSG-VPRLRKICASLEQALRNGASIDELEPEL 908
            +  AL   ++  A  L H +  + G+ S    V   R++ A L Q     A ++ +E  L
Sbjct: 1603 IRKALALGQQEDAVRLAHTLKGVAGNLSADTLVEEARQLEAKLAQGEACEAELEAVETRL 1662