Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 941 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella amazonensis SB2B

 Score =  717 bits (1851), Expect = 0.0
 Identities = 423/954 (44%), Positives = 602/954 (63%), Gaps = 61/954 (6%)

Query: 4   RYGLRARVMTLTLAPTLIIGLLLSALFSFNRYHDLETQVINSGASIIEPLAIASEDALRM 63
           +Y LR+ V+ L LAPT+++G+LL + F+ NR++DLE  + + G++IIEPLAI++E +L  
Sbjct: 9   KYSLRSWVLVLALAPTILVGILLGSYFTINRFYDLEDTLKDMGSNIIEPLAISAEQSLST 68

Query: 64  QSRESVRRIISYAHRKNSKLVRSIAVFDANHELFVTSNFHPNFEKLMYPKDKPIPFLSSS 123
            +RE  + +++ A    S LV+SIA+FD N++LFVTS++H +FE + Y +       +  
Sbjct: 69  NNREITKILLARAQLNKSTLVKSIAIFDINNQLFVTSHYHKDFEVMRYKEALESLKETQF 128

Query: 124 VIDENTLILRTPII---SERTVLDNGDA-------------NPATPVMGYIAIELDLSSL 167
             + +TLI+RTPI    S++ + DN D              N    ++GY+++ L+    
Sbjct: 129 EHEGDTLIVRTPIFAISSKQPMGDNIDEGSGRFSEAVVMPDNSNAALLGYVSMMLNKEKA 188

Query: 168 RLQQYQEIFSAGLVLVIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKM 227
            L+Q++   +A ++++IG+ L+ +F  RL+ +VT+PIT M  +V +IR G LD R+EG +
Sbjct: 189 LLEQHRAAVAAFIIVLIGVQLNLLFTFRLVKNVTQPITDMVKLVGKIREGKLDARLEGNL 248

Query: 228 HGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEA 287
            GELD L +GINAMA SLSEYH EMQ +IDQATSDLRETLEQ+EIQN+ LD AKK AQEA
Sbjct: 249 IGELDLLNRGINAMAASLSEYHDEMQQNIDQATSDLRETLEQIEIQNIALDRAKKDAQEA 308

Query: 288 ARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDIL 347
           +R+KSEFLANMSHELRTPLNGVIGF RQ+LKT L +SQ +Y++TIE+SA +LL IINDIL
Sbjct: 309 SRIKSEFLANMSHELRTPLNGVIGFARQLLKTPLHSSQMEYIKTIERSATSLLQIINDIL 368

Query: 348 DFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRI 407
           DFSKLEA K+ LE +PF  +  LE+ +NL A SAH KGLE  + +D  +P  + GD +R+
Sbjct: 369 DFSKLEANKMVLETMPFGLRASLEDTINLLAGSAHAKGLEFVVDVDANVPENLSGDVMRL 428

Query: 408 QQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFS 467
            QV+TNL+GN+IKFTE G++ + + + +L D+ + L+  V DTGIGI   QQ  LFQAF 
Sbjct: 429 GQVMTNLLGNAIKFTEEGSVHLKISLASLEDNNLTLRCEVTDTGIGIDPEQQELLFQAFG 488

Query: 468 QADASISRRYGGTGLGLVITQKL-VSHMGGEISLTSRLHQGSTFWFTLRLHTTELPLNDG 526
           QAD+SISRRYGGTGLGLVIT++L V  MGG I   S + +GS+FWFT+ L  +  P++D 
Sbjct: 489 QADSSISRRYGGTGLGLVITKRLVVQMMGGRIGFHSEVGKGSSFWFTVPLQLSPFPVHDT 548

Query: 527 YNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE-EQHV----YDYVLLNL 581
              + L    +LL EP       + + L    + VT  S   E E+H+    YD +LL+ 
Sbjct: 549 LPLEKLIGHSVLLFEPRKLTRESIARKLKDWHMMVTLASNEDELERHLDDRHYDAILLS- 607

Query: 582 APSKETNPTLVELWVQRALAMTHNVIVGVPSTELALADQLMQRYPVKCISKPLSRKKLLQ 641
             S E+   L +  + R    T ++++     +  +  Q M+ +    +  P+S  KL Q
Sbjct: 608 GQSCESCEDL-QRHLSRVKDHTGSLLLLNDCLDPEVYTQEMEPFVDLVLQLPVSELKLAQ 666

Query: 642 TL--------AAQQPQLANTSLPKPQADKLPLCVMAVDDNPANLKLITALLQERVEYVVS 693
            L        AA +P LA     KP A + PL V+AVDDN ANLKLI  LL+E V  VV+
Sbjct: 667 NLIFPPVKKNAAPKPALAT----KPSA-RHPLNVLAVDDNLANLKLIDTLLKELVANVVA 721

Query: 694 CTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGER 753
            +SG +A+  A+SR FD+I MDIQMP  DGVTA + I+Q    R+TP+IAVTAHA+  ER
Sbjct: 722 VSSGDQAVALAKSRSFDLIFMDIQMPGTDGVTATRLIRQDSLNRNTPIIAVTAHAINEER 781

Query: 754 DRLLKAGMDDYLTKPIEEHILQQVLVHWSPHTRSKQVAKVTPPDGAAVISNALPSSPPAE 813
           +R+  +GMD YL KPI+E  L+ V+  W           +T P      SN L       
Sbjct: 782 ERIQASGMDGYLPKPIDEAALKGVISRW-----------LTRPKFTHFDSNTL------- 823

Query: 814 EAIIDWPVALRQSANKEDLAKEMLGMLVDYLREVETVVNTALEDEEYPASDLLHHIHKLH 873
               +W + L Q+  KEDLA +ML M+++ L      +  A+   +     +L+ +HKLH
Sbjct: 824 ----NWELCLSQANQKEDLAIDMLKMMLESLPGTVNDIELAMARSD--NESMLYTVHKLH 877

Query: 874 GSCSYSGVPRLRKICASLEQALRNGASIDELEPELFELQDEMAKVLEASRDYLN 927
           G+  Y GVP  +K+C  +E AL+ GA + ++EPE+ EL DE+ KV  A+   ++
Sbjct: 878 GASCYCGVPTTQKLCQQIESALKGGADVADVEPEILELLDELTKVESAATQVIS 931