Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1287 a.a., signal transduction histidine kinase-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  291 bits (746), Expect = 1e-82
 Identities = 238/824 (28%), Positives = 403/824 (48%), Gaps = 67/824 (8%)

Query: 124  VIDENTLILRTPIISERTVLDNGD-ANPATPVMGYIAIELDLSSLRLQQYQEIFSAGLVL 182
            ++ E T  L    + +RT+LD    A  AT   G I +  + S+ RL  +          
Sbjct: 373  LVHERTSQLEKMGVLQRTILDAASYAIIATDTEGIITV-FNPSAERLLGFTA------KE 425

Query: 183  VIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKKGINAMA 242
            ++G+    +F   L  +V R  T +   +        D  +     G+ DT     N   
Sbjct: 426  MVGLQTPAIF--HLEEEVVRRATQLSEELGTKIEPGFDAFVAKSRRGKEDTN----NWTY 479

Query: 243  VSLSEYHVEMQHSIDQATSDLRETLEQLEI---------QNVELDIAKKRAQEAARVKSE 293
            VS S   + ++ S+     + ++ +  L I         +  EL  A+++A +A+R KS+
Sbjct: 480  VSKSGARITVKLSVTTLYGEDKDIMGYLGIAYDLTEQLKREQELADAREQALQASRAKSD 539

Query: 294  FLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKLE 353
            FLANMSHE+RTP+N V+G  +  L+T+L     DYL+  +++A +LL ++NDILDFSK+E
Sbjct: 540  FLANMSHEIRTPMNAVLGLLQMTLQTELPPRPRDYLEKTQQAAKSLLALLNDILDFSKIE 599

Query: 354  AGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTN 413
            AG++ LE   F  Q++L ++ ++ ++   +K +E+  ++ P +P  ++GD LR++Q+L N
Sbjct: 600  AGRIELERQGFSLQQLLGDMGSILSSQVQQKDIELVYQVAPSVPDQLIGDSLRLRQILLN 659

Query: 414  LVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASI 473
            ++ N+IKFTE+G+I   ++     D    L   ++D+GIG++  QQA +F+ FSQAD+SI
Sbjct: 660  VLTNAIKFTEKGDIITRIDADLGDDGTCHLHIEIQDSGIGMTNEQQAIIFKGFSQADSSI 719

Query: 474  SRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELPLNDGYNADSLN 533
            SRRYGGTGLGL IT++LV  M GEI +TS    GSTF   ++L         G     + 
Sbjct: 720  SRRYGGTGLGLAITRELVHLMQGEIRVTSSPGVGSTFTIDVQLGFDATKYRPGARFSGV- 778

Query: 534  HRHLLLIEPNMQAAAIVQQTLVQSGLEVT-----YRSAIPEEQHVYDYVLLNLAPSKETN 588
               +LL+E N  +  +  + L   G EVT       +    E+   D   + LA  +   
Sbjct: 779  --RVLLVEDNHTSRLVFSELLRDLGCEVTALNNGLTAMKTIERMAPDSFDVLLADWQLPG 836

Query: 589  PTLVEL--WVQR--ALAMTHNVIVGVPSTELALADQLMQRYPV--KCISKPLSRKKLLQT 642
               +EL  W++   +L+    +I+    ++  L  QL  R       + KP++R+ + + 
Sbjct: 837  LDGLELASWIRHLDSLSRQPGIIIVTAFSQAMLEAQLKHREEEFDATLIKPVTREMVSRC 896

Query: 643  LAAQQPQLANTSLPKPQADKLPLC-------VMAVDDNPANLKLITALLQERVEYVVSCT 695
            L +   +  N  L       LPL        ++ V+DN  N  + T+LL +    V+   
Sbjct: 897  LQSVLERHNNDGL--DMLSHLPLAPSLVGRRLLLVEDNATNRLVATSLLGQLGAEVIEAV 954

Query: 696  SGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDR 755
             G +A++    +QFD++LMDIQMP MDG    + I+      D P+IA+TA+AM  ++  
Sbjct: 955  DGFQALKLLSRQQFDLVLMDIQMPGMDGYQTTRKIRNELMLTDLPIIAMTANAMPEDKQA 1014

Query: 756  LLKAGMDDYLTKPIE-EHILQQVLVHWSPHTRSKQVAKVTPPDGAAVISNALPSSPPAEE 814
               AGM+ +++KP E + +  ++L + SP     + ++    D  +  + +L ++P  E 
Sbjct: 1015 CRDAGMNCHISKPFEIDEVATKLLQYLSPPEHPMRSSEALAED-ESTSAGSLTAAP--EA 1071

Query: 815  AIIDW-------PVALRQ--SANKEDLA--------KEMLGMLVDYLREVETVVNTALED 857
            A+ +        P ++RQ   AN  DL         +E+   ++D      +     L  
Sbjct: 1072 AVTEMHNPKDALPQSVRQFSQANGLDLEEACNRLGDRELFTRVIDQFLLDISQAQRCLSV 1131

Query: 858  EEYPASDLLHHIHKLHGSCSYSGVPRLRKICASLEQALRNGASI 901
             E    D     H L    +  G   L  +  + E   R  A +
Sbjct: 1132 PEIAMKDARIQYHSLKSGAASCGFTALALVLRNAEANCRPEAEL 1175