Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1021 a.a., signal transduction histidine kinase-like protein protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  282 bits (721), Expect = 9e-80
 Identities = 207/675 (30%), Positives = 345/675 (51%), Gaps = 52/675 (7%)

Query: 269  QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADY 328
            +LE +N +L  A+++A+ A+R+K++FLA MSHE+RTP+NGV+G    + KT+L+  Q  Y
Sbjct: 375  ELEHKNADLVEAREKAEAASRIKADFLACMSHEIRTPMNGVLGILSLLEKTELSIQQKHY 434

Query: 329  LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEI 388
            L     SA +LLT++NDILDFSK+E+GK  ++ +PF+  ++L++ +   A  A  KGL++
Sbjct: 435  LDVASTSAESLLTLLNDILDFSKIESGKFEIDEVPFDLIQLLDDFIQPFAIRAEAKGLKL 494

Query: 389  TLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVR 448
             L I     R V GDP RI+QVL NLV N+IKFTE G I V V+      + + L   + 
Sbjct: 495  LLDISGIHLRWVRGDPGRIRQVLVNLVSNAIKFTEVGWIAVRVQASEDTANGVSLMVSIE 554

Query: 449  DTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGS 508
            DTGIGIS+ +Q  LF  F+QAD++ +R +GGTGLGL I ++L   M G+I + S    GS
Sbjct: 555  DTGIGISKDKQEVLFSPFTQADSTTTRHFGGTGLGLSIAKRLCELMDGDIRVISAEDAGS 614

Query: 509  TFWFTLRLHT---------TELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGL 559
            TF F LRL +           L       A  L     +L E  +  +  ++  L++S  
Sbjct: 615  TFKFHLRLKSEAASGAEWPPALNCRAPLLAGELGASERMLFE--LLDSWQLRPALLESNT 672

Query: 560  EVTYRSAIPEEQHVYDYVLLNLAPSKETNPTLVELWVQRAL----AMTHNVIVGVPSTEL 615
            E+    A+     +   V  +L    +    +     ++ L     ++H   +G+  T L
Sbjct: 673  ELAQTPALAAADWLIYSVPEHLVSITQELQKMAAFATEKGLKFLAIISHRQQIGLAPTIL 732

Query: 616  ALADQLMQRYPVKCISKPLSRKKLLQTLAAQQPQLANTSLPKPQADKL--PLCVMAVDDN 673
            +    L          +P+   KL+  L+       +  LP     +L     ++ V+DN
Sbjct: 733  SSCHYL---------CRPMQALKLVDILSDSDGN--DVVLPDDTQSQLNDSAQILLVEDN 781

Query: 674  PANLKLITALLQE-RVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIKQ 732
              N  +   +L+   +++V   T+G +A+   Q RQ+D+ILMD  MP MDG  A +AI++
Sbjct: 782  KVNQMVALGMLRNLGLKHVEVVTNGLQALAALQHRQYDLILMDCLMPEMDGYQATQAIRK 841

Query: 733  LKG---YRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHWSPHTRSKQ 789
             +    ++D  ++A+TA+AM G+R+  L+AGM+DY+ KP+ +  + +VL  + P      
Sbjct: 842  GEAGQKHKDIKIVAMTANAMKGDRETCLEAGMNDYIAKPLHQAEVARVLERYIPLDS--- 898

Query: 790  VAKVTPPDGAAVISNALPSSP-PAEEAIIDWPVALRQSANKEDLAKEMLGMLVDYLREVE 848
                         ++  PS+P  A+  + D   AL   +   +L  ++L +  + +    
Sbjct: 899  -------------TSCAPSNPLSADTLLFDRHCALELMSGDSELLGDILKVFAEEMAVYL 945

Query: 849  TVVNTALEDEEYPASDLLHHIHKLHGSCSYSGVPRLRKICASLEQALRNGASIDELEPEL 908
                +A+   ++ A  +   +H + G+     +  L  +   +E A R    +  LE   
Sbjct: 946  EAFESAMGRRDFAA--VRTAVHAIKGAAGNLCMSPLAGVAKEMEMAARRLDWV-YLEAHQ 1002

Query: 909  FELQDEMAKVLEASR 923
             E  D + + LE S+
Sbjct: 1003 AEFIDVLRRTLEQSQ 1017