Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1042 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  285 bits (728), Expect = 1e-80
 Identities = 209/657 (31%), Positives = 335/657 (50%), Gaps = 49/657 (7%)

Query: 268  EQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQAD 327
            +++E  N  L  A+++A+ AA+ K +FLA MSHE+RTP+NGVIG    + +TQL+  Q  
Sbjct: 385  QEMEFSNWALSEAREKAEVAAKTKEDFLACMSHEIRTPMNGVIGILGLLGETQLSPMQKR 444

Query: 328  YLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLE 387
            Y+     SA++LL+++NDILDFSK+E+GK  +E I F+  E+L+  V   +    E+ L 
Sbjct: 445  YVDVASASADSLLSLLNDILDFSKIESGKFEIEAIEFDLVELLDLFVQSVSLKLEERHLP 504

Query: 388  ITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMV 447
            + + I     R VVGDP R++Q+L NLVGN+IKFTE G I + +  R      + L   V
Sbjct: 505  LFVDITQLQYRYVVGDPSRLRQILVNLVGNAIKFTEEGWIALRLSNRLSESGEVLLSCEV 564

Query: 448  RDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQG 507
             DTGIGI++ + A LF  F Q D+S +R +GGTGLGL I ++L   M GEI + S+   G
Sbjct: 565  EDTGIGIAKEKLAMLFNPFIQVDSSTTRMFGGTGLGLSIAKRLCELMQGEIKVRSQQEVG 624

Query: 508  STFWFTLRLHTTELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAI 567
            S F FTL     +      + A  L+   + L+        ++ + L   G  V+Y   +
Sbjct: 625  SIFSFTLTQQLADSDKMIDWRA-GLSPERVTLMGQLGAFERMLGELLTSWGARVSY---L 680

Query: 568  PEEQHVY--DYVLLNLAPSKETNPTLVELWVQRALAMTHNVIVGVPSTELALADQLMQRY 625
             EE  +   D ++ + AP +E     +  W  R L   H      P+T +       Q+ 
Sbjct: 681  EEEDAILETDVIIYSFAPRREAFVEELNAW--RELVGQH---ADRPNTRVLPLLSYWQQT 735

Query: 626  P-------VKCISKPLSRKKLLQTLAAQQPQ---------LANTSLP-KPQADKLPLCVM 668
                    V  + +PL+ ++L++ L+ +  +         +   S+P KP+       V+
Sbjct: 736  EFEKQDARVPHLGRPLNIRQLIRALSDRADEEMIEPVIEPIVEPSMPDKPK-------VL 788

Query: 669  AVDDNPANLKLITALLQERVEYVVSCTSGQEA---IEQAQSRQFDIILMDIQMPHMDGVT 725
             V+DN  N  +   +L +        ++G+EA   +   Q   + +ILMD  MP MDG  
Sbjct: 789  LVEDNKVNQMVALGMLHQLGVQADVASNGREALALLSALQGNPYQLILMDCLMPEMDGFQ 848

Query: 726  ACKAIKQLKG---YRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHW- 781
            A  AI++ +G   +   P+IA+TA+AM G+R+  ++AGMDDYLTKP+   +L++ L  W 
Sbjct: 849  ATAAIREGQGGSQFCALPIIALTANAMKGDREHCIRAGMDDYLTKPLVLSVLKECLYRWF 908

Query: 782  SPHTRSKQVAKVTPPDGAAVISNALPSSPPAEEAIIDWPVALRQSANKEDLAKEMLGMLV 841
            S   ++ + A    PD        LP+   AE  + D   AL   +  E L  E+L + V
Sbjct: 909  SLSQQNYEAALGHDPD-----VETLPTPIEAESQLFDRDSALALMSGDEALLDEVLQVFV 963

Query: 842  DYLREVETVVNTALEDEEYPASDLLHHIHKLHGSCSYSGVPRLRKICASLEQALRNG 898
            + +++        +   +  A  +   +H + G+ S   +  L ++   LE   R G
Sbjct: 964  EEMQDHRKAFIEGIAAADCTA--IRSSVHAIKGAASNLSMTALVELARQLEADARRG 1018