Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1768 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  333 bits (855), Expect = 4e-95
 Identities = 219/669 (32%), Positives = 359/669 (53%), Gaps = 30/669 (4%)

Query: 267  LEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQA 326
            +  L++ + EL  AK  A  A++ KS+FLANMSHE+RTP+N +IG ++  L+T L   Q 
Sbjct: 1016 ISSLKLLSEELTQAKDVADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTSLDKKQQ 1075

Query: 327  DYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGL 386
            +Y++ I++++ +LL IINDILDFSK+EAGKL +E +PF+   +LE++ ++ +  A +K L
Sbjct: 1076 NYVEKIDRASKSLLGIINDILDFSKIEAGKLDIEAVPFQLDTMLEDLSDMFSVKAADKQL 1135

Query: 387  EITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFM 446
            E+   + P IPR +VGDPLR+ QVL NL+ N+IKFTE+G + +S+      D+ I L+F 
Sbjct: 1136 ELLFAVAPNIPRHLVGDPLRLSQVLINLMNNAIKFTEQGEVMLSISQLVREDEEILLKFS 1195

Query: 447  VRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQ 506
            VRD GIG++E Q+ +LFQ+FSQAD+S +R+YGGTGLGL I ++LV  MGGEI + S+   
Sbjct: 1196 VRDNGIGLTEEQRGKLFQSFSQADSSTTRKYGGTGLGLAICKQLVELMGGEIGVESQFGN 1255

Query: 507  GSTFWFTLRLHTTELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEV-TYRS 565
            GSTF+F++R    +  L     A  L    +L+ + N  A  I++ TL   G  V T RS
Sbjct: 1256 GSTFFFSVRFKVADNQLIKV--AQELEGMRILVADDNATARDILRSTLESMGFTVDTVRS 1313

Query: 566  AIPE----EQHVYDYVLLNLA-PSKETNPTLVELWVQRALAMTHNVIVGVPSTELALADQ 620
                    ++  Y   L++   P  +   T   L  +R        ++     +    D+
Sbjct: 1314 GAEALSRCQETDYGVALIDWRMPEMDGLETARRLLSERT--NPPKTLIVSAHADGDFIDK 1371

Query: 621  LMQRYPVKCISKPLSRKKLLQTLAAQQPQLANTSLPKPQADKLPLC--------VMAVDD 672
              Q      I+KP+S  +LL  + +   +     + +  ++  P          ++ V+D
Sbjct: 1372 AEQAEISGYITKPISASRLLDGIMSALGKQGAMPVRRKGSEVSPALLAQLKGKRILLVED 1431

Query: 673  NPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIKQ 732
            N  N ++ +  L++    +    +GQ A+E+   + FD++LMD QMP MDG  A   +++
Sbjct: 1432 NEMNQEVASEFLEQVGVILSIAENGQVALEKLAMQSFDLVLMDCQMPVMDGYQATAELRK 1491

Query: 733  LKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHWSPHTRSKQVAK 792
                 D PVIA+TA+AMAG+++  L+AGM+D++ KPIE  +L + L+ +     S+ + +
Sbjct: 1492 RPELADLPVIAMTANAMAGDKEMCLRAGMNDHIAKPIEVSLLYKTLLEYLGDD-SQVIEE 1550

Query: 793  VTPPDGAAVISNALPSSPPAEEAIIDWPVALRQSANKEDLAKEMLGMLVDYLREVETVVN 852
             +         +A     PA    +D    L+   N   L + +             ++ 
Sbjct: 1551 TSTEQTDQHSQDAYWPQHPA----LDIDKGLQLVQNSARLYRRIFERFYTGQSRCAELIA 1606

Query: 853  TALEDEEYPASDLLHHIHKLHGSCSYSGVPRLRKICASLEQALRNGASIDELEPELFELQ 912
            TA    E    + + + H L G       P L  +   +EQ L      D +E ++ E  
Sbjct: 1607 TA--QREGKQEEAVRYAHTLKGVAGNLCCPELVALAKQVEQTLS-----DSIEADVTEAL 1659

Query: 913  DEMAKVLEA 921
             +M ++L++
Sbjct: 1660 TQMGELLDS 1668