Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 933 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella loihica PV-4

 Score =  737 bits (1902), Expect = 0.0
 Identities = 412/943 (43%), Positives = 611/943 (64%), Gaps = 48/943 (5%)

Query: 4   RYGLRARVMTLTLAPTLIIGLLLSALFSFNRYHDLETQVINSGASIIEPLAIASEDALRM 63
           +Y LRA V+ L LAPT+++G+LL + F+ NR+++LE  +I  G +IIEPLAI++E  L  
Sbjct: 9   KYSLRAWVLVLALAPTILVGILLGSYFTINRFYELEESLIERGGNIIEPLAISAEIGLET 68

Query: 64  QSRESVRRIISYAHRKNSKLVRSIAVFDANHELFVTSNFHPNFEKLMYPKDKPIPFLSSS 123
           ++ E+ +R+I+      S LV+ IA+FD N+ + VTS+ + + E + Y  ++PI  L ++
Sbjct: 69  KNFETTKRLITSVQLNKSNLVQFIAIFDTNNRVIVTSHHYKSHEFMRY--NEPIDSLQNT 126

Query: 124 VIDE--NTLILRTPIISERT--VLDNGDANPA-----TPVMGYIAIELDLSSLRLQQYQE 174
            +++  +++I+R+PI S +   V+   D+N       +  +GYIA+ L+  +  L+Q++ 
Sbjct: 127 EVEQFGDSIIMRSPIFSSQRELVVSPYDSNSMAQQVNSAKLGYIAVLLNKENALLEQHRA 186

Query: 175 IFSAGLVLVIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKMHGELDTL 234
             +A ++++IG+ L+ +F  RL+ +VT PIT M  +V +IR G LD R++G + GELD L
Sbjct: 187 AVAAFIIVLIGVQLNLLFTFRLVKNVTHPITEMVRVVAKIREGKLDTRVDGNLIGELDLL 246

Query: 235 KKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEF 294
           K+GINAMA SLSEYH EMQ +IDQATSDLRETLEQ+EIQNVELD+AKKRA EA+R+KSEF
Sbjct: 247 KRGINAMAGSLSEYHEEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEASRIKSEF 306

Query: 295 LANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKLEA 354
           LANMSHELRTPLNGVIGF +Q+LKT L  SQ DY++TIEKSA NLL IINDILDFSKLEA
Sbjct: 307 LANMSHELRTPLNGVIGFAKQLLKTPLHASQQDYIKTIEKSATNLLGIINDILDFSKLEA 366

Query: 355 GKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNL 414
           GK+ LEN+PF  +EV+++ ++L A SA EK LE+ + I+P I   V GD LR+ QV+TNL
Sbjct: 367 GKMELENMPFALREVIDDTISLLANSAKEKDLELVVDIEPSINDNVSGDALRVSQVITNL 426

Query: 415 VGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASIS 474
           VGN+IKFT+ G++ + + + +   + ++++  + DTGIGI +  QAQLFQAF QAD+SIS
Sbjct: 427 VGNAIKFTDSGSVHLKMRLTSEEAEKVNVRCEITDTGIGIDKPHQAQLFQAFGQADSSIS 486

Query: 475 RRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELPLNDGYNADSLNH 534
           RR+GGTGLGL+IT++L++ MGG+I   S   +GSTFWFTL L  +  P++     D+L  
Sbjct: 487 RRFGGTGLGLIITKRLINRMGGQIGCISAPGKGSTFWFTLPLKLSPYPISQPLETDNLID 546

Query: 535 RHLLLIEPNMQAAAIVQQTLVQSGLE-VTYRSA------IPEEQHVYDYVLLNLAPSKET 587
           + +LL EP   +  + +  L   G++ ++  +A        EE   +DY +++      +
Sbjct: 547 KTVLLFEPRELSRKVHESLLSHWGMQNISITTAEDLARVAGEEGRHFDYAIIS-CNDLAS 605

Query: 588 NPTLVELWVQRALAMTHNVIVGVPSTELALADQLMQRYPVKCISKPLSRKKLLQTL---- 643
           +P L+ + + +   ++   +    ST+ A    L+Q    K +  P+  + L  TL    
Sbjct: 606 SPNLLNV-LNKIAKISDYTLYLCSSTDSAAKMSLIQPNVDKVMQAPVGERALAVTLINPH 664

Query: 644 AAQQPQLANTSLPKPQADKLPLCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQ 703
            AQ   +      K   ++ P+ V+AVDDNPANLKLI  LL+E V  V    +GQEA+E 
Sbjct: 665 RAQYEAMPFQEAVKETQEREPMSVLAVDDNPANLKLIKTLLKELVTQVTVTDNGQEAVEI 724

Query: 704 AQSRQFDIILMDIQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDD 763
           A+++ FD+I MDIQMP  DG +A K I++    R+TP++AVTAHA+A ER+R+ ++GMD 
Sbjct: 725 AKAKSFDLIFMDIQMPGTDGFSATKQIREHSLNRNTPIVAVTAHAIAEERERIDQSGMDG 784

Query: 764 YLTKPIEEHILQQVLVHWSPHTRSKQVAKVTPPDGAAVISNALPSSPPAEEAIIDWPVAL 823
           YL KPI+E  L+ V+  W                         P     ++  ++W + L
Sbjct: 785 YLPKPIDEAALKSVISRWKTR----------------------PQFTHFDQHTLNWDLCL 822

Query: 824 RQSANKEDLAKEMLGMLVDYLREVETVVNTALEDEEYPASDLLHHIHKLHGSCSYSGVPR 883
            Q+  K  LA EML MLVD L E    ++ ALE ++  A  ++ H+HKLHG+  Y GVP 
Sbjct: 823 TQANQKTSLALEMLQMLVDSLPETREHISGALERQDSQA--MVSHVHKLHGASCYCGVPT 880

Query: 884 LRKICASLEQALRNGASIDELEPELFELQDEMAKVLEASRDYL 926
            +++C  +EQ+L+  AS+D +EPE+ EL DE++KV  A+   +
Sbjct: 881 TQRLCREIEQSLKQNASVDLVEPEILELLDELSKVESAANQVI 923