Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1230 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  307 bits (787), Expect = 2e-87
 Identities = 200/520 (38%), Positives = 285/520 (54%), Gaps = 22/520 (4%)

Query: 280  AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNL 339
            AK+ A+ A   KSEFLANMSHE+RTP+N +IG  +   +TQLT  QADYL     SA +L
Sbjct: 711  AKQDAESANLYKSEFLANMSHEIRTPMNAIIGMLQLASRTQLTPQQADYLDKAGFSAQSL 770

Query: 340  LTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRG 399
            L IINDILDFSK+EAGKL LE + F   +VL+  ++L A  A EKG+E+ L         
Sbjct: 771  LRIINDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEKGVELLLYAPVTAGLI 830

Query: 400  VVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQ 459
            + GDPLR+ QVL N++ N++KFT+ G I++  E    RD  I L+F VRDTGIGIS+ QQ
Sbjct: 831  LEGDPLRLGQVLINMLSNAVKFTQSGEIELGCEDVGERDHRITLKFWVRDTGIGISKEQQ 890

Query: 460  AQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLH-T 518
              LF AF+QAD S +R+YGGTGLGL I++ LVS MGG + + S L  GSTF FT+     
Sbjct: 891  ESLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVQSELGVGSTFSFTISFEIA 950

Query: 519  TELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTL---------VQSGLEVTYRSAIPE 569
             E  +      + + +   L+++ N  A  I    +           +G E  Y+     
Sbjct: 951  EEAEVKPLIVPEVIGNLKTLVVDDNPTALQIYSTAMRDFHFDVDTASNGAEALYKL---- 1006

Query: 570  EQHVYDYVLLN-LAPSK---ETNPTLVELWVQRALAMTHNVIVGVPSTELALADQLMQRY 625
            E    D +LL+ + P     E    L  +     L     +I+        L + L    
Sbjct: 1007 EHRPVDLLLLDWMMPEMDGVEVIKALDAMVADGRLEKRPVIIMMTAYASEPLKEDLDDLD 1066

Query: 626  PVKCISKPLSRKKLLQTLAA---QQPQL-ANTSLPKPQADKLPLCVMAVDDNPANLKLIT 681
                + KP     L   + A    +P++    +LP          ++ V+DN  N ++ T
Sbjct: 1067 IYAMLQKPFKASALFDEIIAAFIDKPKINPAAALPVEGNATGTGQILLVEDNFINQQVAT 1126

Query: 682  ALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIKQLKGYRDTPV 741
             LL+     V    +GQ A++   ++Q+D +LMDIQMP MDG+TA K +++     + PV
Sbjct: 1127 ELLKSAGYEVDVAENGQVALDMVDAKQYDAVLMDIQMPVMDGLTATKELRKRYTKEELPV 1186

Query: 742  IAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHW 781
            IA+TAHAM+G+R++ L AGM+ ++TKPI  + L   L  W
Sbjct: 1187 IAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFDTLAQW 1226