Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1047 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  235 bits (599), Expect = 1e-65
 Identities = 139/294 (47%), Positives = 184/294 (62%), Gaps = 12/294 (4%)

Query: 275 VELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEK 334
           +EL  AK+ A+ A R K EFLANMSHE+RTP+NG++G T   L + LT  Q DYL+ ++ 
Sbjct: 520 LELQQAKEAAESANRAKGEFLANMSHEIRTPMNGILGMTDLALDSALTPEQRDYLEMVKS 579

Query: 335 SANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDP 394
           SA+ LL IINDILDFSK+EAGKL LE+I F  +++L E +      A ++ L +  ++  
Sbjct: 580 SADALLVIINDILDFSKIEAGKLELEHIHFHLRQLLRETLKPLELRARQRSLTLRCEVPE 639

Query: 395 KIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGI 454
           ++  G +GDP R++QVL NLVGN+IKFTE G + V VE    RD +  L F V DTGIGI
Sbjct: 640 EVADGYLGDPGRLRQVLINLVGNAIKFTEEGQVAVRVE---ARDGL--LHFAVSDTGIGI 694

Query: 455 SERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514
              +Q  +F+AFSQAD+S++RR+GGTGLGL I  +LV  MGG + + S   QGSTF FT 
Sbjct: 695 PADKQQLIFEAFSQADSSVTRRFGGTGLGLTICTRLVRLMGGHMWVESDPGQGSTFHFTA 754

Query: 515 RLHTTELPLNDGYNADS------LNHRHLLLIEPNMQAAAIVQQTLVQSGLEVT 562
           RL     P   G  AD+      L    LL+ E N     +V   L + G  VT
Sbjct: 755 RLEAVAGPAESG-EADAGRGEVVLPPLRLLVAEDNPVNQKLVLTLLQKRGHRVT 807



 Score =  117 bits (294), Expect = 3e-30
 Identities = 82/261 (31%), Positives = 129/261 (49%), Gaps = 9/261 (3%)

Query: 664  PLCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDG 723
            PL ++  +DNP N KL+  LLQ+R   V    +GQ+A+    +  FD++LMD+QMP M G
Sbjct: 779  PLRLLVAEDNPVNQKLVLTLLQKRGHRVTLADNGQQALAALATDHFDLVLMDMQMPVMGG 838

Query: 724  VTACKAIKQLKGYR----DTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLV 779
            + A + I+  +  R      P++A+TA+AMAG+R+  L+AGMD Y++KP+        + 
Sbjct: 839  LEATRRIRAAEAARGDGQHLPIVAMTANAMAGDRELCLEAGMDGYVSKPLRRDEFFSAMA 898

Query: 780  HWSPHTRSKQ--VAKVTPPDGAAVISNALPSSPPAEEAIIDWPVALRQSANKEDLAKEML 837
               P  R +Q   A   P DG A ++ A   S PA     D   A+ +    E+L   ++
Sbjct: 899  DVLPPERLRQAGAAAAIPADGQAAVAAAPSESAPAALRRCDRAEAVARLEGDEELFAMLV 958

Query: 838  GMLVDYLREVETVVNTALEDEEYPASDLLHHIHKLHGSCSYSGVPRLRKICASLEQALRN 897
             M  D L      +N AL  ++  A  L    H L G  +     R   +   LE   + 
Sbjct: 959  KMFSDDLPNYLQRLNAALAGQDMEA--LSREAHTLKGLLATFSAGRGTALALELETRAK- 1015

Query: 898  GASIDELEPELFELQDEMAKV 918
            G  ++ L   + +LQ+E+  V
Sbjct: 1016 GGHVETLGVLVRQLQEELELV 1036