Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1288 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  272 bits (695), Expect = 1e-76
 Identities = 228/704 (32%), Positives = 338/704 (48%), Gaps = 74/704 (10%)

Query: 248  YHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLN 307
            + V+ +    Q    L++  E+ +      + A++ A++ AR+KSEFLANMSHE+RTPLN
Sbjct: 628  FDVQRRQGRLQVVGTLQDITERRQADATR-EAAREAAEQLARIKSEFLANMSHEIRTPLN 686

Query: 308  GVIGFTRQMLKTQLTNSQADY-LQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEF 366
             ++GF  Q+ + +   S+A    Q I  +  +LL IINDILDFSK+EAGK+ LE  P   
Sbjct: 687  AILGFA-QLGQRETPESRARIGFQRIHDAGQHLLGIINDILDFSKIEAGKMKLEMQPTNP 745

Query: 367  QEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGN 426
             EV++ VV L A S  +KGLE+ ++    +P    GD LR+ QVL NL+GN++KFT++G+
Sbjct: 746  CEVVDHVVKLMAASVFQKGLELRVEESDNLPAAFDGDSLRLAQVLLNLLGNALKFTDQGS 805

Query: 427  IDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVI 486
            I +  E      D  DL + +RDTGIG++  Q  +LF AF Q     SRR+GGTGLGL I
Sbjct: 806  ITLREER-----DGQDLIYSIRDTGIGMNREQLGRLFHAFEQGHGGASRRFGGTGLGLTI 860

Query: 487  TQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTT-----ELPLNDGYNADSLNHRHLLLIE 541
            T++LV  MGG I + S   QG+ F   + +H         PL  G        R  L   
Sbjct: 861  TKRLVEMMGGSIEVESTPGQGTCFSIRIPMHNVVEAQPSPPLQVGLLGFEQEDRRQLAAT 920

Query: 542  PNMQAAAIVQQTLVQSGLEVTYRSAIPEEQHVYDYVLLNLAPSKETNPTLVELWVQRA-- 599
                 AA    T +  G   T  S            L  +    +  P L+   +QR   
Sbjct: 921  ----LAAYGISTAIIGGDAATTPSG-----------LALVVADVKVEPALLGRLLQRGER 965

Query: 600  LAMTHNVIVGVPSTELALADQLMQRYPVKCISKPLSRKKLLQTLAAQQPQLANTSLPKPQ 659
            +A+ H      P + LA   Q ++R        PL R   +++LA  Q   A T+   PQ
Sbjct: 966  VAVLHQPGCLPPPSPLAPELQYLER--------PL-RACHVESLALGQCA-AGTTAADPQ 1015

Query: 660  ADKLPLCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSR---QFDIILMDI 716
                 + ++  +DN AN  ++  LL+     +V   +G EA+E  Q R    F + L D+
Sbjct: 1016 RRLGGIAILIAEDNQANRLVLRELLESEGASIVCVENGLEAVETLQRRGPQDFQLFLTDV 1075

Query: 717  QMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQ 776
            QMP MDG TA + +   + Y + P+I VTA+    +R   L AGM D++ KP +   L +
Sbjct: 1076 QMPVMDGYTAAREVS--RQYPELPIIGVTANVTLEDRQNCLNAGMVDHVGKPYQLDALVE 1133

Query: 777  VLVHWSPHTRSKQVAKVTPPDGAAVISNALPSSPPAEEA---IIDWPVALRQSANKEDLA 833
             ++               PP+   + +   P  PPA +     IDWP    +   K  L 
Sbjct: 1134 AILRVVRSDARPSPLWQAPPN--PLPTPTTPPPPPASDLDSDAIDWPQLRSRLGVKPGLM 1191

Query: 834  KEML-------GMLVDYLREVETVVNTALEDEEYPASDLLHHIHKLHGS-CSYSGVPRLR 885
            +  L       G L D LR++    N  LE        L    H L+GS  + + VP   
Sbjct: 1192 ERFLRLFLESNGRLPDELRDL--ACNPDLE-------RLRRLGHALYGSAANLAAVP--- 1239

Query: 886  KICASLEQALRNGASIDELEPELF--ELQDEMAKVLEASRDYLN 927
               A+L + L   A+  E E  +   EL D++ ++      YL+
Sbjct: 1240 --TATLARRLEYAAAAGEPESAVLAGELADQLERLFATIHQYLD 1281