Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 858 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  255 bits (651), Expect = 1e-71
 Identities = 178/537 (33%), Positives = 274/537 (51%), Gaps = 30/537 (5%)

Query: 265 ETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNS 324
           E + + +    EL  A+++A+ A R KSEFLANMSHE+RTP  G++G    +L T L   
Sbjct: 328 EDVTERKAAESELRHAREKAEAANRAKSEFLANMSHEIRTPFTGILGVLDLLLHTPLNEK 387

Query: 325 QADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEK 384
           Q  Y++    S   LL I+NDILD SK+EAGKL +     +   +L E+  +QA +A +K
Sbjct: 388 QERYIRLAYGSTKQLLAILNDILDISKIEAGKLVIHPEEVDLVLLLGELTEVQAAAAAQK 447

Query: 385 GLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQ 444
           GLE    I   IP  + GDP+R++Q++ NL+ N+IKFT  G +++ +E   +      L+
Sbjct: 448 GLEFRYHIKGIIPPKIHGDPVRLRQIMANLLNNAIKFTNSGWVELDIECTRIAPGRQHLR 507

Query: 445 FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRL 504
             VRD+GIG+    Q  +F  F+QAD+S +R +GGTGLGL I ++LV  M G I ++S  
Sbjct: 508 VEVRDSGIGVPPELQETIFDKFTQADSSTTRLFGGTGLGLTICKQLVELMHGSIGVSSNS 567

Query: 505 HQGSTFWFTLRLHTTE--------LPLNDGYNADSLNHRHLLL--IEPNMQ------AAA 548
            +GS FWF + L  ++        LP      A   + R LL+   E N +      A A
Sbjct: 568 GEGSCFWFDIELPESDPTVSPVPVLPAGSPITALPRDTRILLVDDTEANREVLAEYLAQA 627

Query: 549 IVQQTLVQSGLE-VTYRSAIPEEQHVYDYVLLNLAPSKETNPTLVELWVQR---ALAMTH 604
             Q     +GLE VT   +   +  + D  +  +   + T    ++   +R    +A+T 
Sbjct: 628 HCQVRQAANGLEAVTLAESWQPDAILMDCQMAGMDGYEATRQIRIQEGQRRRTPIIALTA 687

Query: 605 NVIVGVPSTELALADQLMQRYPVKCISKPLSRKKLLQTLAAQQPQLANTSLPKPQADKLP 664
            V+ G    E  LA  +    P     KP+  + L+ T+      L        +  +  
Sbjct: 688 FVMRG--DREKCLAAGMDDYLP-----KPVDAQTLIATIG---KWLEGRETNPARTPRFS 737

Query: 665 LCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGV 724
             ++ VDDNP   +  T LL+     V S +SG+EA++      FD++LMD +MP +DG 
Sbjct: 738 GRILLVDDNPEIREASTCLLEALGCQVQSASSGEEALQLGPEADFDLVLMDCRMPGLDGC 797

Query: 725 TACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHW 781
              +A +  +    T +IA+TA      R +  +AGM+D+L KP  E  L  +L  W
Sbjct: 798 ATTRAWRARERGTPTAIIALTAGDPDESRAQCREAGMNDFLAKPFSEQELVTLLRRW 854