Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1026 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  310 bits (793), Expect = 4e-88
 Identities = 210/529 (39%), Positives = 296/529 (55%), Gaps = 50/529 (9%)

Query: 280 AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNL 339
           AK+ A+ A R KS+FLANMSHE+RTP+NGVIG T   L T+LT  Q DYL+ ++ SAN L
Sbjct: 402 AKEAAENANRAKSDFLANMSHEIRTPMNGVIGMTELALDTELTEEQRDYLEAVQMSANAL 461

Query: 340 LTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRG 399
           L+II+DILDFSK+EAG+L +E IPF+ ++V  + +   A  A +KGLE+  +  P +PR 
Sbjct: 462 LSIIDDILDFSKIEAGRLDVELIPFDLEKVCADALRTVAVRADQKGLELLARRGPGVPRR 521

Query: 400 VVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQ 459
           ++GDP R++Q+L NL+GN+IKFTERG I+V+VE+         L F V DTGIGI+  +Q
Sbjct: 522 LLGDPGRLRQILLNLLGNAIKFTERGEIEVAVELAEPGAAGQVLYFCVSDTGIGIAPEKQ 581

Query: 460 AQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTT 519
             +F+AF+Q D+S +RR+GGTGLGL I  +L   MGG I + S   QGS F FTL+L T 
Sbjct: 582 EHIFEAFAQEDSSTTRRFGGTGLGLTICSRLCELMGGRIWVDSVPGQGSAFHFTLQLPT- 640

Query: 520 ELPLNDGYNADSLNHR-----HLLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE----- 569
                DG  A     R      LLL+  N +    +Q  L   G  V   ++  E     
Sbjct: 641 -----DGAAAPEPERRLSGKPALLLVVANARQRCRLQGLLASWGATVVAAASGAEGLALL 695

Query: 570 EQHVYDYV--------------LLNLAPSKETNPTLVEL---WVQRALAMTHNVIVGVPS 612
           EQ  +D V              L +LA S    P L+ L    +++ +A    + VG   
Sbjct: 696 EQGQWDGVVADSRPVDGDAGDLLEHLARSPGRVPLLMLLSPSRMRQEIARCKALGVGHYL 755

Query: 613 TELALADQLMQRYPVKCISKPLSRKKLLQTLAAQQPQLANTSLPKPQADKLPLCVMAVDD 672
            + ALAD+L +           S + LL+   A  P     +   P A    L V+  +D
Sbjct: 756 GKPALADELWR-----------SLQALLEPAVAGVPATVAEAAGTPPAG---LEVLLAED 801

Query: 673 NPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIK- 731
           +P N +L+  +L+     V     G EA+  A  R+FD++LMD+QMP M G  A + I+ 
Sbjct: 802 HPVNQQLMRNMLERMGHRVTLARHGGEAVAAAARRRFDLVLMDMQMPEMGGEQATRLIRA 861

Query: 732 --QLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVL 778
             Q +G     + A++A A   +R R L AGMD YL KP+++  LQ+VL
Sbjct: 862 DEQARGLAPLRIYALSAAARREDRQRGLVAGMDGYLLKPLQQKDLQEVL 910