Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1306 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  342 bits (877), Expect = 9e-98
 Identities = 242/677 (35%), Positives = 343/677 (50%), Gaps = 35/677 (5%)

Query: 267  LEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQA 326
            + + ++   EL  A+  A+EA   KS FLANMSHE+RTP+N +IG     +KT+LT  Q 
Sbjct: 555  ISERKLMEEELRRARATAEEATEAKSLFLANMSHEIRTPMNAIIGMAHLAMKTELTPKQR 614

Query: 327  DYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGL 386
            DY+  I  +A +LL IINDILDFSK+EAGKL+LE +PF  ++VL+ V  L    A+EKGL
Sbjct: 615  DYVGKIHNAAISLLGIINDILDFSKIEAGKLSLEYVPFSLEDVLDNVSGLLGLKANEKGL 674

Query: 387  EITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFM 446
            E+   ++   P G+VGDPLR+ Q+LTNLV N+IKFTERG I ++        D + LQF 
Sbjct: 675  ELLFNVNAGTPAGLVGDPLRLNQILTNLVSNAIKFTERGQITLTTRPVDQAGDRVKLQFW 734

Query: 447  VRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQ 506
            + D GIG+S  Q   LFQAF+QAD S +R+YGGTGLGL I+++LV  MGG I   S L +
Sbjct: 735  IEDMGIGMSREQLLHLFQAFTQADGSTTRKYGGTGLGLSISRRLVEMMGGTIWADSTLGE 794

Query: 507  GSTFWFTLRLHTTELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQT---------LVQS 557
            GSTF FT      E          SL    +L+ + N  A  I+ +          LV S
Sbjct: 795  GSTFCFTAWFGRAEELARPRTLPASLAGLRVLVADDNGAAREILGEALRHLDLRPDLVAS 854

Query: 558  GLEVTYRSAIPEEQHVYD-YVLLNL---APSKETNPTLVELWVQRALAMTHNVIVGVPST 613
            G E    + + E Q   D Y +L L    P  +   TL +L      A    V++     
Sbjct: 855  GAEAL--AQLTEMQGGADPYRVLFLDWQMPDLDGVSTLHKLQQALPQAQWPRVVMVTAYD 912

Query: 614  ELALADQLMQRYPVKCISKPLSRKKLLQTLA----AQQPQLANTSLPKPQADKLPLCVMA 669
            +  L  Q         + KP+S   L   L     A         +  PQ     + ++ 
Sbjct: 913  QEELRRQTENLGICGILVKPVSASTLFDVLVSLVDADNAPATPLHIAAPQTRIDGMRILL 972

Query: 670  VDDNPANLKLITALLQERVEYVVSCTSGQEAI---EQAQSRQFDIILMDIQMPHMDGVTA 726
             +DN  N ++   LLQ     V     G +A+   E++    FD++LMD+QMPH+DG  A
Sbjct: 973  AEDNEINQQIAVELLQSMGAQVTVAGDGLQAVELLERSPDDSFDLVLMDLQMPHLDGYDA 1032

Query: 727  CKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHWSPHTR 786
             + ++  + +   P++A+TAHAM  ER+R L  GM+D+L KPI+   L   L  W     
Sbjct: 1033 TERLRCQQRFAHLPILAMTAHAMPEERERCLAIGMNDHLAKPIDPTALAATLARWYEERP 1092

Query: 787  SKQVAKVTP-PDGAAVISNALPSSPPAEEAIIDWPVALRQSANKEDLAKEMLGMLVDYLR 845
                   TP  DG    ++ALP  P      ++    L + A  + L + +L   VD   
Sbjct: 1093 GASAPAPTPAKDG----TDALPPIPG-----VNTTQGLARMAGNQALYRRLLLRFVDTQT 1143

Query: 846  EVETVVNTALEDEEYPASDLLHHIHKLHGSCSYSGVPRLRKICASLEQAL-RNGASIDEL 904
                 +  AL D +  A++  H  H L G     G   L++   +L+QAL RN     +L
Sbjct: 1144 GTGEHIRQALADGDITAAE--HLAHTLKGVAGNIGAEVLQQKATALDQALRRNDGQGQKL 1201

Query: 905  EPELFELQDEMAKVLEA 921
            E     L +E+A V  A
Sbjct: 1202 ESLRQRLAEELAAVTGA 1218