Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1177 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  229 bits (584), Expect = 8e-64
 Identities = 149/425 (35%), Positives = 219/425 (51%), Gaps = 42/425 (9%)

Query: 164 LSSLRLQQYQEIFSAGLVLVIGILLSGVFASRLMYDVTRPITHMKNMVDRI-RRGHLDVR 222
           LS++  +    +   G VLV+ I+L       L   V  P+  +  +  ++    +  +R
Sbjct: 154 LSAMVRENAVRVTLVGFVLVVLIILI------LRRTVVVPVAGLAQVARKVAEERNYALR 207

Query: 223 IEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKK 282
                H E+  L    N M   +  +  E Q ++ Q      E    +  +   LD A+ 
Sbjct: 208 AARHGHDEIGRLVDAFNTMLEQVERH--ERQLTVQQG-----ELERMVHERTTALDTAQA 260

Query: 283 RAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTI 342
           R + A+R KSEFLA ++HELRTP+N VIG     L T L   Q +YL  +  SA +LL +
Sbjct: 261 RVERASRAKSEFLAGVTHELRTPMNAVIGMVDITLGTDLAPKQREYLNLVRSSARSLLGV 320

Query: 343 INDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVG 402
           +N +LDFSKLEAG+LALE IPF  +++LEEV +L       K +E+ + ID  +P  +VG
Sbjct: 321 VNGVLDFSKLEAGRLALEAIPFRTRDLLEEVTDLFHDRLAIKDIELVVDIDTGVPPVLVG 380

Query: 403 DPLRIQQVLTNLVGNSIKFTERGNIDVSV----------------------------EMR 434
           DPLR++QVL NL  N+ KFTERG + + V                            +  
Sbjct: 381 DPLRLRQVLVNLAANAFKFTERGEVVIRVGRADTEANAGAGAENIPEAPADGTTDSPQTG 440

Query: 435 ALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHM 494
               + ++L F VRDTGIGI+   + +LF+++SQAD S+SRR+GGTGLGL I + LV  M
Sbjct: 441 GAHGNGVELAFSVRDTGIGIAPEARERLFESYSQADVSVSRRFGGTGLGLSIVRALVHLM 500

Query: 495 GGEISLTSRLHQGSTFWFTLRLHTTELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTL 554
           GG++ + S   +GSTF FT R    +           L  R  L+ E N   A ++ + L
Sbjct: 501 GGDVGVDSEPGRGSTFRFTARFGLPQEQEAPAPPPPQLAGRQALVAEANPACARVLARLL 560

Query: 555 VQSGL 559
            Q G+
Sbjct: 561 AQLGV 565



 Score = 51.2 bits (121), Expect = 4e-10
 Identities = 65/272 (23%), Positives = 94/272 (34%), Gaps = 64/272 (23%)

Query: 645  AQQPQLANTSLPKPQADKLPLCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIE-- 702
            + +P        +P  D     V+ VDDNP N  + T +L      V +  SG+ A++  
Sbjct: 790  SSRPDPVGPDPAQPVPDLRGTRVLLVDDNPINRAVATEMLHAAGVEVEAVPSGETALDTL 849

Query: 703  ------------------------------------------QAQSRQFDIILMDIQMPH 720
                                                        Q+  FD +L+DIQMP 
Sbjct: 850  ARSVRPAYGPSEHGEPGEPDRPDGPDGPDGPDRPDGAIVRKTDTQNVAFDAVLLDIQMPG 909

Query: 721  MDGVTACKAIKQ------LKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHIL 774
            MDG     AI+       L+     PVIA TA     + + L +AG+   L KP++   L
Sbjct: 910  MDGYQTAAAIRARNASGGLRLRPGAPVIAFTARVEGEDEEALHRAGIVGRLPKPVDRQEL 969

Query: 775  QQVLVHWSP----HTRSKQVAKVTPPDGAAVISNALPSSPPA---------EEAIIDWPV 821
               L    P       ++  A+  P D         PS P A           A  D P 
Sbjct: 970  LATLHRHLPAGPVANAAESQAETDPTDAGPARPAQAPSRPQAGNGKPPTGHRPAPEDLPA 1029

Query: 822  ALRQSANKEDLAKEMLGMLVDYLREVETVVNT 853
            +L    +     + M G    YLR + + VNT
Sbjct: 1030 SL-PGLDVTSGVRRMNGKAWLYLRVLGSFVNT 1060