Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1689 a.a., sensory transduction histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  270 bits (691), Expect = 4e-76
 Identities = 215/685 (31%), Positives = 329/685 (48%), Gaps = 66/685 (9%)

Query: 276  ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKS 335
            EL  AK +A  A R KS+FLANMSHE+RTP+N +IG +   L+T L   + DY+  + ++
Sbjct: 941  ELASAKLQADAANRAKSDFLANMSHEIRTPMNAIIGMSYLALQTDLAEKRKDYIAKVHQA 1000

Query: 336  ANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPK 395
            A +LL IINDILDFSK+EA KL +E+I F+  EVL ++ N+      E  + +   I   
Sbjct: 1001 AGSLLNIINDILDFSKIEANKLTVEHIEFDLDEVLTQLNNVIGFKVEENSMRLIYDIATD 1060

Query: 396  IPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRA-LRDDVIDLQFMVRDTGIGI 454
             PR  +GDP R+ Q+L N   N++KF+ +G+ D+ +  +A L      L F V D GIGI
Sbjct: 1061 CPRYFIGDPQRLGQILLNYCNNAVKFSPKGS-DILLSCQAELDKQGATLTFCVADDGIGI 1119

Query: 455  SERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTL 514
               +QA+LF +F Q D S SR+YGGTGLGL I ++L   M GE+   S L QGS F+  L
Sbjct: 1120 PLDKQARLFHSFEQGDTSTSRKYGGTGLGLAICKRLSELMQGEVWCESELGQGSRFY--L 1177

Query: 515  RLHTTELPLNDGYNAD----SLNHRHLLLIEPNMQAAAIVQQTLVQSGLEV--------- 561
            RLH   LPL   Y+      +L    L ++      +AI  +   + G++          
Sbjct: 1178 RLH---LPLVKPYDLSTQFAALQGESLSIVGFMPDLSAIYSRFAARVGMQARTLEMHMAL 1234

Query: 562  ------TYRSAIPEEQHVYDYVLLNLAPSKE----------TNPTLVELWVQR---ALAM 602
                  T +  I  E + ++  LL++  + +          + P  ++  V +    +A 
Sbjct: 1235 AELSACTSQHLIMCETNAFEPELLSVVLANDKLGLLLIGNGSEPVAIQSLVDKHPQIIAK 1294

Query: 603  THNVIVGVPSTELALADQLMQRYPVKCISKPLSRKKLLQTLAAQQPQLANTSLPKPQADK 662
             H +++      L L   L+ R        P  +    Q++   + QLA   L       
Sbjct: 1295 QHPILLRTLGESLLL---LLNR-----DRAPFGQHLEHQSITTLKNQLAGVEL------- 1339

Query: 663  LPLCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMD 722
                 + V+DN  N +L   LL++    V     GQEA+     + FD +LMD QMP MD
Sbjct: 1340 -----LLVEDNYLNQELAVELLRQAGARVTVAQHGQEALTLLAQQSFDCVLMDGQMPVMD 1394

Query: 723  GVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIE-EHILQQVLVHW 781
            G  A + I+    + D P+IA+TA+AM  +R+R L AGM+  + KP + + +   +  H 
Sbjct: 1395 GYEATRLIRAQPQFADLPIIAMTANAMDSDRERALAAGMNAQINKPFQVQQLYSTIAQHV 1454

Query: 782  SPHTRSKQVAKVTPPDGAAVISNALPSSPPAEEAIIDWPVALRQSANKEDLAKEMLGMLV 841
            S H  S Q    +P       +      P  EE  ID  +AL       DL + +L + V
Sbjct: 1455 SVH--SVQSLPESPEAHDLDKAQLKQGLPLVEELDIDAGLAL--CNYNADLYRHLLTLFV 1510

Query: 842  DYLREVETVVNTALEDEEYPASDLLHHIHKLHGSCSYSGVPRLRKICASLEQALRNGASI 901
                  + + N   E  +   S L   +H L G     G   L++    LE +L + +S+
Sbjct: 1511 Q--TGAKLLQNQQNEFSQDNLSALRLSLHTLKGVAGNIGAVSLKEDSGRLEASLTDISSL 1568

Query: 902  DELEPELFELQDEMAKVLEASRDYL 926
             +L+  + E   +   +L A    L
Sbjct: 1569 QQLDANIQETVSQEIHLLHAKLQQL 1593