Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 935 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella oneidensis MR-1

 Score =  743 bits (1919), Expect = 0.0
 Identities = 425/941 (45%), Positives = 605/941 (64%), Gaps = 46/941 (4%)

Query: 4   RYGLRARVMTLTLAPTLIIGLLLSALFSFNRYHDLETQVINSGASIIEPLAIASEDALRM 63
           +Y LR+ V+ L LAPT+++G+LL + F+ NR+++LE  +I  G++IIEPLAIASE  L  
Sbjct: 9   KYSLRSWVLVLALAPTILVGILLGSYFTINRFYELEDTLIEQGSNIIEPLAIASEVGLVG 68

Query: 64  QSRESVRRIISYAHRKNSKLVRSIAVFDANHELFVTSNFHPNFEKLMYPKDKPIPFLSSS 123
             RE+ +R+++ A    S LV+SIA+FD +++LFVTS++H +FE + Y +   +  L  +
Sbjct: 69  NDREATKRLLAAAQLNKSTLVKSIAIFDIHNQLFVTSHYHKDFEIMRYKE--ALTNLQKT 126

Query: 124 VIDE--NTLILRTPIISERTVLDNGDANPATP-----VMGYIAIELDLSSLRLQQYQEIF 176
            I+   ++LILRTPI +  T   +  AN         ++GYI++ ++     L+Q++   
Sbjct: 127 EIEHVGDSLILRTPIFATATPTGSEPANVDIQTDNGELLGYISVIINKERALLEQHRAAV 186

Query: 177 SAGLVLVIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKK 236
           +A ++++IG+ L+ +F  RL+ +VT+PIT M  +V +IR G LD R++G + GELD LK+
Sbjct: 187 AAFIIVLIGVQLNLLFTFRLVKNVTQPITEMVRVVAKIREGKLDARLQGNLIGELDLLKR 246

Query: 237 GINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLA 296
           GINAMA SLSEYH EMQ +IDQATSDLRETLEQ+EIQNVELD+AKKRA EA+R+KSEFLA
Sbjct: 247 GINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEASRIKSEFLA 306

Query: 297 NMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGK 356
           NMSHELRTPLNGVIGF RQ++KT L +SQ DY+ TIE+SA NLL IINDILDFSKLEAGK
Sbjct: 307 NMSHELRTPLNGVIGFARQLVKTPLHSSQVDYINTIERSATNLLAIINDILDFSKLEAGK 366

Query: 357 LALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVG 416
           + LE++PF  +E L E + L + SA  KGLE+ + I P +P  V GD +R+ Q++ NLVG
Sbjct: 367 MVLESMPFGLRETLGETITLISGSAQAKGLELVVDIAPNVPDNVNGDSMRVCQIINNLVG 426

Query: 417 NSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRR 476
           N+IKFT+ G++ V +E++A  D+ + L+  V DTGIGI E QQ  LFQAF QAD+SISRR
Sbjct: 427 NAIKFTDSGSVLVKLELQAQTDEQVVLRCDVIDTGIGIDESQQDFLFQAFGQADSSISRR 486

Query: 477 YGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELPLNDGYNADSLNHRH 536
           +GGTGLGLVIT++LV+ MGG+I  TS + +GS FWFTL L   +  + D    + L ++ 
Sbjct: 487 FGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWFTLPLGLGQFQIGDSLPLEKLQNKT 546

Query: 537 LLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPEEQ-------HVYDYVLLNLAPSKETNP 589
           +L  EP +   +++ + L Q   +VT+   IP  Q       H +DYVLL+       N 
Sbjct: 547 VLFYEPRVLTHSVISRQLKQWDTKVTHHQHIPSLQTTLSTTEHQFDYVLLSCHGFNNPN- 605

Query: 590 TLVELWVQRALAMTHNVIVGVPSTELALADQLMQRYPVKCISKPLSRKKLLQTL---AAQ 646
            LV   +Q A A T  +IV     E  +  Q ++      +S P+S  +L + +     +
Sbjct: 606 HLVSTLIQ-AKAKTDCLIVLFDCQEQDMLSQFIRPNADVVLSLPVSEHQLARNMLYPPME 664

Query: 647 QPQLANTSLPKPQADKLPLCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQS 706
              L   S+  P A +  L V+AVDDN ANLKLI  LL E V  V++  SG+EA++QA++
Sbjct: 665 YDLLPPVSIAVPAA-RQSLTVLAVDDNFANLKLIDTLLNELVTTVIAVNSGEEAVKQAKT 723

Query: 707 RQFDIILMDIQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLT 766
           R FD+I MDIQMP  DG++A K I+Q    R+TP+IAVTAHA+A ER+ +L +GMD YL 
Sbjct: 724 RTFDLIFMDIQMPGTDGISATKQIRQGSMNRNTPIIAVTAHAIAEERELILGSGMDGYLP 783

Query: 767 KPIEEHILQQVLVHWSPHTRSKQVAKVTPPDGAAVISNALPSSPPAEEAIIDWPVALRQS 826
           KPI+E  L+  +  W                         P     +   ++W + L Q+
Sbjct: 784 KPIDEAALKAEINRWITR----------------------PKFTHFDLHTLNWDLCLTQA 821

Query: 827 ANKEDLAKEMLGMLVDYLREVETVVNTALEDEEYPASDLLHHIHKLHGSCSYSGVPRLRK 886
            +K  LA +ML ML+D L +  + +  AL   +     +L  IHKLHG+  Y GVP  ++
Sbjct: 822 NHKSGLALDMLRMLLDSLPQTVSAIEAALSQNDQVT--MLSTIHKLHGASCYCGVPTTQR 879

Query: 887 ICASLEQALRNGASIDELEPELFELQDEMAKVLEASRDYLN 927
           +C  +E AL+  A +++LEPE+ EL DE+ KV  A++  L+
Sbjct: 880 LCQEIESALKREARVEDLEPEILELLDELTKVESAAKQVLS 920