Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  353 bits (906), Expect = e-101
 Identities = 240/706 (33%), Positives = 394/706 (55%), Gaps = 45/706 (6%)

Query: 241  MAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSH 300
            M V++S   ++ Q+  + A   + +  E L++ + EL +AK  A  A++ K +FLANMSH
Sbjct: 992  MTVNVSTL-LDSQNQFESAVVSMVDMTE-LKLLSDELLVAKDEADAASKAKGDFLANMSH 1049

Query: 301  ELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALE 360
            E+RTP+N +IG ++  L+TQL   Q +YL+ IE+++ +LL+IINDILDFSK+EAGKL +E
Sbjct: 1050 EIRTPMNAIIGMSQLCLQTQLDKKQKNYLEKIERASQSLLSIINDILDFSKIEAGKLDIE 1109

Query: 361  NIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIK 420
            N+ F+   +LE++ ++ +  A +K +E+   + P +PR ++GDPLR+ QVL NL+ N+IK
Sbjct: 1110 NVSFQLDTMLEDLSDMFSERAAQKQIELLFAVAPNVPRHLLGDPLRLGQVLINLMNNAIK 1169

Query: 421  FTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGT 480
            FTERG + +S+ +   ++D + L+F VRD+GIG+++ QQ++LF++F+QAD S +R+YGGT
Sbjct: 1170 FTERGEVLLSLSLVEQQNDDVVLRFSVRDSGIGLTQEQQSKLFKSFTQADTSTTRKYGGT 1229

Query: 481  GLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRL-HTTELPLNDGYNADSLNHRHLLL 539
            GLGL I+++LV  MGG I + S+L  GSTF+FT++L  ++   L  G   D ++   +L+
Sbjct: 1230 GLGLAISKQLVELMGGSIGVESQLGHGSTFFFTVKLCISSGQKLFVGQELDGMS---ILV 1286

Query: 540  IEPNMQAAAIVQQTLVQSGLEV-TYRSA----IPEEQHVYDYVLLN-LAPSKETNPTLVE 593
             + N  A  I++ TL   G  V T RS     +   Q  Y   L++   P+ +   T  +
Sbjct: 1287 ADDNATARDIMRTTLESMGFNVDTVRSGDEAIMRCSQQEYAVALIDWKMPNLDGIETAKQ 1346

Query: 594  LWVQRALAMTHNVIVGVPSTELALADQLMQRYPVKCISKPLSRKKLLQTLAAQQPQLANT 653
            +  Q   A    +++           Q+ Q      ISKP+S  +LL  +     +    
Sbjct: 1347 IKQQTKNA--PRILMVSAHANQDFLTQIEQLGLAGYISKPISASRLLDGIMNALGRSGIL 1404

Query: 654  SLPKPQAD-----KLPL---CVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQAQ 705
             + + Q +      LPL    ++ V+DN  NL++ T  L++    +   T+GQ A+++  
Sbjct: 1405 PVRRHQDNIAPELLLPLKGKRILLVEDNEMNLEVATEFLEQVGIILSIATNGQIALDKLA 1464

Query: 706  SRQFDIILMDIQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYL 765
             + FD++LMD QMP MDG  A KAI+Q       PVIA+TA+AMAG+++  L+AGM+D++
Sbjct: 1465 QQSFDLVLMDCQMPVMDGYQATKAIRQRPELAQLPVIAMTANAMAGDKEMCLRAGMNDHI 1524

Query: 766  TKPIEEHILQQVLVHWSPHTRSKQVAKVTP--PDGAAVISNALPSSPPAEEAIIDWPV-- 821
             KPIE ++L Q L+        K +    P   +   V++ +L       E+++ WP   
Sbjct: 1525 AKPIEVNLLYQTLL--------KYLGAPVPSLENAEFVVNESLNPLNLDVESVVKWPEHP 1576

Query: 822  ------ALRQSANKEDLAKEMLGMLVDYLREVETVVNTALEDEEYPASDLLHHIHKLHGS 875
                   L+   N + L + +        R V   +N AL   +    D +   H L G 
Sbjct: 1577 ELDIDRGLQLVQNSKRLYQRIFDRFATSQRNVVDQINKALASNK--REDAVRMAHTLKGL 1634

Query: 876  CSYSGVPRLRKICASLEQALRNGASIDELEPELFELQDEMAKVLEA 921
                   +L ++   LE  L   A   + + EL ++Q  +A + EA
Sbjct: 1635 AGNLSSSKLAELARQLELHLSENA---DYQVELDQIQILVASICEA 1677