Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1188 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  320 bits (821), Expect = 3e-91
 Identities = 202/522 (38%), Positives = 294/522 (56%), Gaps = 18/522 (3%)

Query: 280  AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNL 339
            AK+ A+ A   KSEFLANMSHE+RTP+N +IG  +   +T LT  Q DYL+    SA +L
Sbjct: 663  AKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTAQQKDYLEKAGFSAQSL 722

Query: 340  LTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRG 399
            L IINDILDFSK+EAGKL LE +PF   +VL+  ++L A  A E+G+E+ L         
Sbjct: 723  LRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLI 782

Query: 400  VVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQ 459
            + GDPLR+ QVL NL+ N++KFT+ G I++  E    RD  I L+F VRDTGIGIS+ QQ
Sbjct: 783  LKGDPLRLGQVLINLLSNAVKFTQSGEIELGCEDVGERDHRITLKFWVRDTGIGISKDQQ 842

Query: 460  AQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLH-T 518
             +LF AF+QAD S +R+YGGTGLGL I++ LVS MGG++ + S L  GSTF FT+     
Sbjct: 843  EKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTISFEIA 902

Query: 519  TELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTL---------VQSGLEVTYR-SAIP 568
             E  +      + LN+   L+++ N  A  I    +           SG E  Y+ S  P
Sbjct: 903  EEAKIEPLVVPEKLNNLRTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEALYKLSRDP 962

Query: 569  EEQHVYDYVLLNLAPSKETNPTLVELWVQRALAMTHNVIVGVPSTELALADQLMQRYPVK 628
             +  + D+++  +  S +    +  +  +  +A    +I+        L  ++       
Sbjct: 963  IDLLLLDWMMPEMDGS-DVISAIDTMVAEGRIAKRPIIIMMTAYAAEPLLHEVDSANVFA 1021

Query: 629  CISKPLSRKKLLQTLAAQQPQLANTSLPKPQAD------KLPLCVMAVDDNPANLKLITA 682
             + KP     L   + A        ++ +P A+      +    V+ V+DN  N ++ T 
Sbjct: 1022 VLQKPFKASSLFDEIIAAFADEPRLNVVQPIAEVAVEEGEHTGLVLLVEDNFINQQVATE 1081

Query: 683  LLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIKQLKGYRDTPVI 742
            LL+     VV   +GQ A++   SR FD +LMDIQMP MDG+TA +A+++       P+I
Sbjct: 1082 LLKSAGYEVVVAGNGQIALDIVDSRPFDAVLMDIQMPVMDGLTAARALRERYSADVLPII 1141

Query: 743  AVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHWSPH 784
            A+TAHAM+G+R++ L AGM+ ++TKPI    L + L HW  H
Sbjct: 1142 AMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLTHWIKH 1183