Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1119 a.a., putative PAS/PAC sensor protein (RefSeq) from Shewanella sp. ANA-3

 Score =  264 bits (675), Expect = 2e-74
 Identities = 210/704 (29%), Positives = 345/704 (49%), Gaps = 49/704 (6%)

Query: 208  KNMVDRIRRGHLDVRIEGKMHG---ELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLR 264
            K  ++R RR       EGKM     EL    K  N + + L    +++   +   T+ LR
Sbjct: 419  KRGIERYRRTG-----EGKMLNKRVELLARCKAGNLIPIELEVVPIQLGDEV-LFTAFLR 472

Query: 265  ETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNS 324
            +  E+ +    +L  AK++A++ ++VKS FLA MSHE+R+PLN ++G    +L + L+  
Sbjct: 473  DISER-KANEQKLQQAKEQAEQGSKVKSRFLATMSHEIRSPLNAILGGVELLLDSSLSKD 531

Query: 325  QADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEK 384
            Q  +     ++ + LL  INDILDFSK+EAG++ LE+  FE  +++ +V+ +    A EK
Sbjct: 532  QRIHANIAREAGSALLHTINDILDFSKIEAGQMVLESHEFEPDKLVAQVLQILEPKAFEK 591

Query: 385  GLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQ 444
            GLE+   ++  +PR VVGD  R++QVL NLV N+IKFT  G I V + +       + L 
Sbjct: 592  GLELVSFVNRNVPRTVVGDQQRLRQVLHNLVDNAIKFTASGTITVEMWIPDNHQTEVQLY 651

Query: 445  FMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRL 504
              V D+GIGIS   Q++LF+ FSQ   + +  Y GTGLGL I  +L++ MGG I L S L
Sbjct: 652  CRVTDSGIGISAEAQSKLFKEFSQVHDTHNTNYKGTGLGLAICSELITMMGGTIELQSEL 711

Query: 505  HQGSTFWFTLRLHTTELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEVTYR 564
             QGS F F + L   E      +   +  H  +LL   +    ++V +   Q G+E    
Sbjct: 712  GQGSRFTFYVSLQLLEGNFCHSHYFPA--HSRVLLAHHDATWLSLVSKQYSQYGVETVEV 769

Query: 565  SAIPEEQHV------YDYVLLNLAPSKETNPTLVELWVQRALAMTHNVIVGVPSTELALA 618
               P  +        ++ +LL+     + N   V    Q  L    +++  V      + 
Sbjct: 770  MDWPSIKRAKKIKGQFNLILLDEGFFLDVNEQDVNRLRQAHLTADGSMVALVSGMSTEIT 829

Query: 619  DQLMQRYPVKCISKPLSRKKLLQTLAAQQPQLANTSLPKPQA-DKLPLCVMAVDDNPANL 677
              L      + ++KPLSR   L  L+  +  LAN    +  A +K    ++  +D+PAN 
Sbjct: 830  HSLATLGLDQVVNKPLSRAMQLALLS--KDALANEFEEEYVAQEKFQGHILLAEDSPANQ 887

Query: 678  KLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIKQLKGYR 737
             +   +L +    +    +G EA++    + FD++LMD++MP MDG+ A + I  L+ + 
Sbjct: 888  IIAGTMLTKAGFDITYACNGLEAVKLVAEKPFDLVLMDVRMPEMDGLEATEVI--LQNHP 945

Query: 738  DTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHWSPHTRSKQVAKVTPPD 797
            +  ++A++A+ M  E +   + GM D++ KP+++  L   +  W P+             
Sbjct: 946  EQVILAMSANVMKEEIEHCYRVGMKDFIAKPVKQKTLLHAIQKWLPN------------- 992

Query: 798  GAAVISNALPSS-PPAEE--AIIDWPV--ALRQSANKEDLAKEMLGMLVDYLREVETVVN 852
              AV+S  LPSS  PAE   +++D  +   L Q+  K  L+     M+  +  E+   +N
Sbjct: 993  --AVVS--LPSSHKPAENTASLLDEQLLAELEQTLGKASLS----NMMTIFCDELAQRLN 1044

Query: 853  TALEDEEYPASDLLHHIHKLHGSCSYSGVPRLRKICASLEQALR 896
               E +     ++    H L  S    G   L  +   LE   R
Sbjct: 1045 QLSELDSTQVDEIEDQAHTLKSSSGSFGATALFLLAQKLEACAR 1088



 Score = 29.3 bits (64), Expect = 0.001
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 154 VMGYI--AIELDLSSLRLQQYQEIFSAGLVLVIGI--LLSGVFASRLMYDVTRPITHMKN 209
           V GY+   + +   +  L+      +  ++ + G+  LL  +F+  L + +TR +T + +
Sbjct: 125 VNGYLFGKVNMGFETQSLENLVNTVTQQILSIAGVEMLLVALFSLLLGHYLTRNLTQLTS 184

Query: 210 MVDRIRRGHLDVRIEGKMHGELDTLKKGINAM 241
              RI  G + VR+  K   E+  + +  N M
Sbjct: 185 ASKRILAGEIGVRVPVKGKDEIAQMTRAFNNM 216