Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 935 a.a., hybrid sensory histidine kinase BarA (RefSeq) from Shewanella sp. ANA-3

 Score =  747 bits (1929), Expect = 0.0
 Identities = 426/943 (45%), Positives = 604/943 (64%), Gaps = 50/943 (5%)

Query: 4   RYGLRARVMTLTLAPTLIIGLLLSALFSFNRYHDLETQVINSGASIIEPLAIASEDALRM 63
           +Y LR+ V+ L LAPT+++G+LL + F+ NR+++LE  +I  G++IIEPLAIASE  L  
Sbjct: 9   KYSLRSWVLVLALAPTILVGILLGSYFTINRFYELEDTLIEQGSNIIEPLAIASEVGLVG 68

Query: 64  QSRESVRRIISYAHRKNSKLVRSIAVFDANHELFVTSNFHPNFEKLMYPKDKPIPFLSSS 123
             RE+ +R+++ A    S LV+SIA+FD  ++LFVTS++H +FE + Y +   +  L  +
Sbjct: 69  NDREATKRLLAAAQLNKSTLVKSIAIFDIQNQLFVTSHYHKDFEIMRYKE--ALTNLHKT 126

Query: 124 VIDE--NTLILRTPIISERTVLDNGDAN-----PATPVMGYIAIELDLSSLRLQQYQEIF 176
            I+   ++LILRTPI +          N         ++GYI++ ++     L+Q++   
Sbjct: 127 EIEHVGDSLILRTPIFATAPPAPGAPVNFDIQTDNGELLGYISVIINKERALLEQHRAAV 186

Query: 177 SAGLVLVIGILLSGVFASRLMYDVTRPITHMKNMVDRIRRGHLDVRIEGKMHGELDTLKK 236
           +A ++++IG+ L+ +F  RL+ +VT+PIT M  +V +IR G LD R+EG + GELD LK+
Sbjct: 187 AAFIIVLIGVQLNLLFTFRLVKNVTQPITEMVRVVAKIREGKLDARLEGNLIGELDLLKR 246

Query: 237 GINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLA 296
           GINAMA SLSEYH EMQ +IDQATSDLRETLEQ+EIQNVELD+AKKRA EA+R+KSEFLA
Sbjct: 247 GINAMAGSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDLAKKRALEASRIKSEFLA 306

Query: 297 NMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNLLTIINDILDFSKLEAGK 356
           NMSHELRTPLNGVIGF RQ++KT L +SQ DY+ TIE+SA NLL IINDILDFSKLEAGK
Sbjct: 307 NMSHELRTPLNGVIGFARQLVKTPLHSSQVDYINTIERSATNLLAIINDILDFSKLEAGK 366

Query: 357 LALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVG 416
           + LEN+PF  +E L E + L + SA  KGLE+ + I P +P  V GD +R+ Q++ NLVG
Sbjct: 367 MVLENMPFGLRETLGETITLISGSAQAKGLELVVDIAPNVPDNVNGDAMRVCQIINNLVG 426

Query: 417 NSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRR 476
           N+IKFT+ G++ V +E++   DD + L+  V DTGIGI E QQ  LFQAF QAD+SISRR
Sbjct: 427 NAIKFTDSGSVLVKLELQNQTDDQVVLRCDVIDTGIGIDENQQDFLFQAFGQADSSISRR 486

Query: 477 YGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELPLNDGYNADSLNHRH 536
           +GGTGLGLVIT++LV+ MGG+I  TS + +GS FWFTL L   +  + D    + L  + 
Sbjct: 487 FGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWFTLPLGLGQFQIGDSLPFEKLKDKT 546

Query: 537 LLLIEPNMQAAAIVQQTLVQSGLEVTYRSAIPE-------EQHVYDYVLLNLAPSKETNP 589
           +L  EP +   +++ + L Q   +VT+   IP         +H +DYVLL+      +NP
Sbjct: 547 VLFYEPRVLTHSVISRQLKQWDTKVTHHQHIPSLLTTLSTTEHQFDYVLLSC--HGFSNP 604

Query: 590 TLVELWVQRALAMTHNVIVGVPSTELALADQLMQRYPVKCISKPLSRKKLLQTLAAQQPQ 649
             +   + +A + T  +IV     E  +  Q ++      +S P+S  +L + +    P 
Sbjct: 605 NQLVSTLNQAKSKTDCLIVLFDCQEQEVLSQFIRPNADVVLSLPVSEHQLARNML--YPP 662

Query: 650 LANTSLPKPQADKLP-----LCVMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIEQA 704
           +    LP P A  +P     L V+AVDDN ANLKLI  LL E V  V++  SG+EA++QA
Sbjct: 663 MEYDILP-PVAITVPAARQSLTVLAVDDNFANLKLIDTLLNELVTTVIAVNSGEEAVKQA 721

Query: 705 QSRQFDIILMDIQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDY 764
           +SR FD+I MDIQMP  DG++A K I+Q    R+TP+IAVTAHA+A ER+ +L +GMD Y
Sbjct: 722 KSRTFDLIFMDIQMPGTDGISATKQIRQGSMNRNTPIIAVTAHAIAEERELILGSGMDGY 781

Query: 765 LTKPIEEHILQQVLVHWSPHTRSKQVAKVTPPDGAAVISNALPSSPPAEEAIIDWPVALR 824
           L KPI+E  L+  +  W                         P     +   ++W + L 
Sbjct: 782 LPKPIDEAALKAEINRWITR----------------------PKFTHFDLHTLNWDLCLT 819

Query: 825 QSANKEDLAKEMLGMLVDYLREVETVVNTALEDEEYPASDLLHHIHKLHGSCSYSGVPRL 884
           Q+ +K DLA +ML ML+D L +  + + TAL   +   + +L  IHKLHG+  Y GVP  
Sbjct: 820 QANHKSDLALDMLRMLLDSLPQTVSAIETALSQND--QATMLTTIHKLHGASCYCGVPTT 877

Query: 885 RKICASLEQALRNGASIDELEPELFELQDEMAKVLEASRDYLN 927
           +++C  +E AL+  A +++LEPE+ EL DE+ KV  A++  L+
Sbjct: 878 QRLCQEIESALKRDARVEDLEPEILELLDELTKVESAAKQVLS 920