Pairwise Alignments

Query, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

Subject, 1236 a.a., multi-sensor hybrid histidine kinase (RefSeq) from Shewanella sp. ANA-3

 Score =  321 bits (822), Expect = 2e-91
 Identities = 203/523 (38%), Positives = 295/523 (56%), Gaps = 20/523 (3%)

Query: 280  AKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKSANNL 339
            AK+ A+ A   KSEFLANMSHE+RTP+N +IG  +   +T LT  Q DYL+    SA +L
Sbjct: 711  AKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTAQQKDYLEKAGFSAQSL 770

Query: 340  LTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRG 399
            L IINDILDFSK+EAGKL LE +PF   +VL+  ++L A  A E+G+E+ L         
Sbjct: 771  LRIINDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLI 830

Query: 400  VVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQ 459
            + GDPLR+ QVL NL+ N++KFT+ G I++  E    RD  I L+F VRDTGIGIS+ QQ
Sbjct: 831  LKGDPLRLGQVLINLLSNAVKFTQSGEIELGCEDVGERDHRITLKFWVRDTGIGISKDQQ 890

Query: 460  AQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLH-T 518
             +LF AF+QAD S +R+YGGTGLGL I++ LVS MGG++ + S L  GSTF FT+     
Sbjct: 891  EKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTISFEIA 950

Query: 519  TELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTL---------VQSGLEVTYR-SAIP 568
             E  +      + LN+   L+++ N  A  I    +           SG E  Y+ S  P
Sbjct: 951  EEAKVEPLVVPEKLNNLRTLVVDDNPTALQIYSALMRDFHFEVDTAASGAEALYKLSRDP 1010

Query: 569  EEQHVYDYVLLNLAPSKETNPTLVELWVQRALAMTHNVIVGVPSTELALADQLMQRYPVK 628
             +  + D+++  +    +    +  +  +  +A    +I+        L  ++       
Sbjct: 1011 IDLLLLDWMMPEM-DGGDVISAIDTMVAEGRIAKRPIIIMMTAYAAEPLQHEVDSANVFA 1069

Query: 629  CISKPLSRKKLLQTLAAQQPQLANTSLPKPQADKLPL-------CVMAVDDNPANLKLIT 681
             + KP     L   + A        ++ +P  D+LP+        V+ V+DN  N ++ T
Sbjct: 1070 VLQKPFKASSLFDEIIAAFADEPRLNVVQP-IDELPVEEGEHTGLVLLVEDNFINQQVAT 1128

Query: 682  ALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIKQLKGYRDTPV 741
             LL+     VV   +GQ A++   SR FD +LMDIQMP MDG+TA +A+++       P+
Sbjct: 1129 ELLKSAGYEVVVAGNGQIALDIIDSRPFDAVLMDIQMPVMDGLTAARALRERFSADVLPI 1188

Query: 742  IAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHWSPH 784
            IA+TAHAM+G+R++ L AGM+ ++TKPI    L + L HW  H
Sbjct: 1189 IAMTAHAMSGDREKSLAAGMNAHITKPIVLTELFETLSHWIKH 1231