Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 359 a.a., tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) from Pseudomonas fluorescens FW300-N2E2

 Score = 85.9 bits (211), Expect = 2e-21
 Identities = 97/368 (26%), Positives = 156/368 (42%), Gaps = 48/368 (13%)

Query: 101 QIHHKQQALSQLMVKF-AGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQ 159
           Q+  K   L  L+  F A +     +P+    + +R RA   L W +  ++    F +  
Sbjct: 11  QLQDKVTRLRDLLAPFDAPEPAVFDSPL----EHFRLRAEFRL-WREAGERHYAMFSQDD 65

Query: 160 SKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPERLGH-------VELVKGDNTRVLVL 212
            +  + +   P+    +N L+P L A    W     L H       +  + GD   ++ L
Sbjct: 66  KRTPILIEQFPIASLRINQLMPQLKAA---WQASAPLSHKLFQVEFLTTLAGD--AMITL 120

Query: 213 RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCE--ETGSR-LSFLPSH 269
            +   L E      +  AS   L + ++  +   + V G     E  E G R  S+    
Sbjct: 121 CYHRPLDEHWHTAASKLASD--LGVSIIGRSKGKREVIGHDYVVEKLEVGGRTFSYRQPE 178

Query: 270 --FIQVNRAVNQHMVVQALNWLEVSPQER---VLDLFCGLGNFTLPLAKQAQAVVGVEGV 324
             F Q N  VNQ M    LNW   +  +R   +L+L+CG GNFTLPLA + + V+  E  
Sbjct: 179 GAFTQPNGTVNQKM----LNWAYDALGDRSDDLLELYCGNGNFTLPLATRVRKVLATEIS 234

Query: 325 DEMVQHATHNAKLNQINNVAFYQANLEQDMTSA-------------SWAQQKFAKVLLDP 371
              V  A  N   N ++NV   + + E ++T A                  +F  V +DP
Sbjct: 235 KTSVNAALSNLSENAVDNVTLVRLSAE-ELTEALNEVRPFRRLHGIDLKSYEFGSVFVDP 293

Query: 372 ARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLE 431
            RAG +    +L+      ++Y+SCNP TLA +  + L    R+ +  + D FP T H+E
Sbjct: 294 PRAGMDPDTCELTR-RFDNILYISCNPETLAANI-AQLHDTHRITRCALFDQFPWTHHME 351

Query: 432 SMALFVKK 439
           S  L  ++
Sbjct: 352 SGVLLTRR 359