Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., tRNA (uracil-5-)-methyltransferase from Pseudomonas stutzeri RCH2

 Score = 87.0 bits (214), Expect = 9e-22
 Identities = 108/405 (26%), Positives = 167/405 (41%), Gaps = 64/405 (15%)

Query: 68  IKVLKPSAERVAPFCAHYAQCGGCDLQHLDRAG---QIHHKQQALSQLMVKFAGQSLALS 124
           +K+LKP  E  A             L  LD A    Q+  K   L +L+  F        
Sbjct: 7   VKLLKPLHEAPA-----------MPLPKLDPAQYETQLAEKAARLVELLAPFDAP----- 50

Query: 125 APVCSDD--QGYRRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPD 182
           AP   D   + YR R    L W +  Q+    F +      + +   P+    +N L+P 
Sbjct: 51  APEVFDSPREHYRLRTEFRL-WREDGQRHYAMFEQGDKHKAILIDDFPIASRRINELMPQ 109

Query: 183 LNALLSEWSQPE----RLGHVELVK---GDNTRVLVLRHLGALIEQDQQRLTDFASQNQL 235
           L A    W   E    +L  VE +    GD   ++ L +   L E  Q      A+   +
Sbjct: 110 LKAA---WQASEVLSFKLFQVEFLTTLAGD--ALITLAYHRPLDEAWQAEAEQLAANLGV 164

Query: 236 TLYLMLEAGELQHVQGEAPYCEET----GSRLSFLPSH--FIQVNRAVNQHMVVQALNWL 289
           +L   +   + + +     Y EE     G    +      F Q N  V Q M    LNW 
Sbjct: 165 SL---VGRSKGKRIVIGRDYVEEALVVAGRTFRYRQPEGAFTQPNGEVCQKM----LNWA 217

Query: 290 EVSPQER---VLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFY 346
             +  ER   +L+L+CG GNFTLPLA + + V+  E     V  A  N     I+N+   
Sbjct: 218 FEALGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAALANIADTGIDNIELV 277

Query: 347 QANLEQ------------DMTSASWAQQKFAKVLLDPARAGAEGIVDQLSALGAKRVVYV 394
           + + E+             +         F  V +DP RAG +    +L+    +R++Y+
Sbjct: 278 RLSAEELTQALNEVRPFRRLADIDLKSYDFGSVFVDPPRAGMDPDTCELTR-RFERILYI 336

Query: 395 SCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMALFVKK 439
           SCNP TLA++  + L+   R+E+  + D FP+T H+ES  L V++
Sbjct: 337 SCNPETLAQNI-AQLADTHRIERCALFDQFPYTHHMESGVLLVRR 380