Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Pseudomonas stutzeri RCH2

 Score =  353 bits (906), Expect = e-102
 Identities = 199/425 (46%), Positives = 264/425 (62%), Gaps = 6/425 (1%)

Query: 16  KHQPVTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSA 75
           K Q + IERL + G G+AF+  +  FV+GALPGEEV  ++   +S+    +  +VL+ SA
Sbjct: 25  KKQRLNIERLANDGRGIAFVEGRTWFVEGALPGEEVEARVLSARSQVVEARCERVLQASA 84

Query: 76  ERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAG-QSLALSAPVCSDDQGY 134
           +R    C H   CGGC+LQH   A Q+  KQ  L++ + + A  Q  A + P+     GY
Sbjct: 85  QRQVEPCPHARLCGGCNLQHAPIADQLALKQHTLAEQLARVADLQPEAWAEPLVGPAFGY 144

Query: 135 RRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPE 194
           RRRARL++ WD K++ L +GFR   S+ IV++  CPVL   L  LLP L   L + S+P+
Sbjct: 145 RRRARLAVRWDVKSKHLDIGFRASSSQEIVSIRECPVLVQPLQTLLPGLLTALRDLSKPQ 204

Query: 195 RLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAP 254
            +GHVEL  G    VL+ RH  AL E D  RL  FA+ ++  L+   E GE Q     A 
Sbjct: 205 AIGHVELFSGTAEAVLI-RHTAALPESDLARLRSFATAHRAQLWWQGE-GEPQPDDCAAS 262

Query: 255 Y---CEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPL 311
                +     L++ P  F+QVN  VN  MV QAL WL+    E VLDLFCGLGNF+LPL
Sbjct: 263 LGYRLDAWDLELAWRPGDFVQVNAPVNDAMVAQALEWLDAGKDEAVLDLFCGLGNFSLPL 322

Query: 312 AKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAKVLLDP 371
           A+    VVGVEGV+ MV  A  NA+ N + +  FY+A+L + +  A WA   FA VLLDP
Sbjct: 323 ARSGARVVGVEGVEAMVARAQENAQRNALEHAHFYRADLSKPLADAPWAGSGFAAVLLDP 382

Query: 372 ARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLE 431
            R GA  IV Q+S L A+RVVYVSCNPATLARD++ L SQG+RL++ G+LDMFP T+H+E
Sbjct: 383 PRDGALEIVRQMSMLKAQRVVYVSCNPATLARDARELASQGYRLKRAGVLDMFPQTAHVE 442

Query: 432 SMALF 436
           +MALF
Sbjct: 443 AMALF 447