Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., tRNA (uracil-5-)-methyltransferase from Pseudomonas syringae pv. syringae B728a

 Score = 91.7 bits (226), Expect = 3e-23
 Identities = 95/364 (26%), Positives = 157/364 (43%), Gaps = 40/364 (10%)

Query: 101 QIHHKQQALSQLMVKF-AGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQ 159
           Q+  K   L +L+  F A +     +P     + YR RA   L W +  ++    F    
Sbjct: 13  QLEEKTVRLRELLAPFDAPEPQVFDSP----REHYRLRAEFRL-WREDQKRYYAMFAPGD 67

Query: 160 SKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPERLGH-------VELVKGDNTRVLVL 212
           ++  + +   P+    +NAL+P    L   W     L H       +  + GD   ++ L
Sbjct: 68  NRTPILLEGLPIASERINALMP---VLRERWEASPTLNHKLFQVDFLTTLAGD--AMITL 122

Query: 213 RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEE---TGSRLSFLPSH 269
            +   L  + Q      A++  ++L    +  +L  V G     E+    G   S+    
Sbjct: 123 CYHRPLDAEWQAAAAQLAAELDVSLIGRSKGQKL--VIGHDYVTEKLDVAGRTFSYRQPE 180

Query: 270 --FIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEM 327
             F Q N  VN  M+  A + L    Q+ +L+L+CG GNFTLPLA + + V+  E     
Sbjct: 181 GAFTQPNGTVNGKMLNWAFDALG-ERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTS 239

Query: 328 VQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAKVLLDPARAG 375
           V  A  N   N ++NV   + + E+             +         F  V +DP RAG
Sbjct: 240 VNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAG 299

Query: 376 AEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMAL 435
            +    +L+    +R++Y+SCNP TLA +  + L    R+E+  + D FP+T H+ES  L
Sbjct: 300 MDPDTCELTR-RFERILYISCNPETLAANI-AQLHDTHRVERCALFDQFPYTHHMESGVL 357

Query: 436 FVKK 439
            V++
Sbjct: 358 LVRR 361