Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Synechocystis sp000284455 PCC 6803

 Score =  193 bits (491), Expect = 8e-54
 Identities = 134/437 (30%), Positives = 215/437 (49%), Gaps = 29/437 (6%)

Query: 20  VTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERVA 79
           +TI  L+HQG G+   +++ +FV    PG+ + ++L + K  YA  QL+K+L+PS +R  
Sbjct: 21  LTITGLNHQGEGIGRFNERVVFVPDTAPGDRLEVRLVKVKRNYALAQLLKILEPSVQRTR 80

Query: 80  PFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSD--DQGYRRR 137
           P C    +CGGC  QHLD   Q+  KQQ +   + +  G +     P+       GYR +
Sbjct: 81  PSCIVADKCGGCQWQHLDYQFQVESKQQQIIDALERIGGFTTLPLEPLLQSPASLGYRNK 140

Query: 138 ARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLN--------ALLSE 189
           A   L    KT Q+Q G+ RK S  +VN+  CPV +  LN LL ++         ++  E
Sbjct: 141 ATYPLS-RSKTGQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENRGWSIYDE 199

Query: 190 WSQPERLGHVELVKGDNTRVLVLRHLGA------LIEQDQQRLTDFASQNQLTLYLMLEA 243
             +  +L H+ L  G  T  ++L  + A      L EQ  + L  +     + L +  E 
Sbjct: 200 EKKQGKLRHLSLRIGQRTGEMLLTLISAHKGLPDLEEQAGEWLERYPDLGGICLNIQPEP 259

Query: 244 -----GELQHVQGEAPYCEETGSRLSFL--PSHFIQVNRAVNQHMVVQALNWLEVSPQER 296
                G+   V      C E  + LSF    + F QVN    + ++ +    L +   E 
Sbjct: 260 NNRIFGDETVVIAGRGICREKFADLSFSLGANTFFQVNSGAAELLLTRLQQALNLQGAEL 319

Query: 297 VLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTS 356
           ++D + G+G FTLPLA+Q +  + +E   + V     NA++NQI NV F    +E  + +
Sbjct: 320 LVDAYAGVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPT 379

Query: 357 ASWAQQKFAKVLLDPARAG-AEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGF-R 414
            S        +LLDP R G A  ++ ++     +++ Y+SC P TLARD + L ++GF  
Sbjct: 380 LSEIPD---VLLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLARDLKFLCAEGFYG 436

Query: 415 LEKLGMLDMFPHTSHLE 431
           +  +   D FP T+H+E
Sbjct: 437 ITWVQGCDFFPQTAHVE 453