Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Synechococcus elongatus PCC 7942

 Score =  186 bits (472), Expect = 1e-51
 Identities = 138/440 (31%), Positives = 216/440 (49%), Gaps = 30/440 (6%)

Query: 20  VTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERVA 79
           +TIE L   G GL  +  + +FV   +PG+ +  +L + +S+YAR +L +VL+ S +R+ 
Sbjct: 17  LTIESLCDSGDGLGRVEGRVVFVPDTVPGDRIQAKLLQVRSRYARAELEEVLEASPDRIR 76

Query: 80  PFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSD-DQGYRRRA 138
           P C    +CGGC  Q +D   Q+  K   +   M +       +   + +    GYR + 
Sbjct: 77  PACIVADKCGGCQWQTVDYPAQVEAKTVIVQDAMQRLGQLETEVQPTIAAPYPLGYRNKV 136

Query: 139 RLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNA--------LLSEW 190
              L    +  ++Q G+ RK S  ++N+  CPV +  LN LL  + A        +  E 
Sbjct: 137 SYPLRRSDR-GEVQAGYFRKGSHRLINLNQCPVQDDRLNPLLAGIKADIAARDWPIYDEQ 195

Query: 191 SQPERLGHVELVKGDNTRVLVLR------HLGALIEQDQQRLTDFASQNQLTLYLMLE-- 242
           ++   L H+ L  G  T  +++        L  +  Q +Q LTD+ +   + L L     
Sbjct: 196 TRSRGLRHLGLRIGQRTGEILITLIATDDQLPEVEAQAEQWLTDYPNVVGVCLNLNPSHG 255

Query: 243 ---AGELQHVQGEAPYCEETGSRLSFL--PSHFIQVNRAVNQHMVVQALNWLEVSPQERV 297
               G+  H     PY  E    L F   P  F QVN    + ++    ++L  S  +R+
Sbjct: 256 NRILGDETHCLAGRPYLIECLDDLEFAIGPETFFQVNTEQAERLLPILKDFLRGS--DRL 313

Query: 298 LDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSA 357
            DL+CG+G  TLPLA +  +V+G+E + E V  A  NA  N I+NV F    +E  +   
Sbjct: 314 FDLYCGVGTLTLPLASEVGSVLGLEILPESVVQAQQNADRNGISNVEFRAGAVEILLAQI 373

Query: 358 SWAQQKFAKVLLDPARAGAE-GIVDQLSALGAKRVVYVSCNPATLARDSQSLLS-QGFRL 415
             +      VLLDP R G E  +++ L     +R+ YVSCNPATLARD Q+L +   +RL
Sbjct: 374 PESPD---AVLLDPPRKGCEPAVIEVLRDRQPQRIAYVSCNPATLARDLQALCAGDRYRL 430

Query: 416 EKLGMLDMFPHTSHLESMAL 435
             +  LD FP T+H+E++AL
Sbjct: 431 LLVQPLDFFPQTAHVETVAL 450