Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., RNA methyltransferase from Sinorhizobium meliloti 1021

 Score =  150 bits (379), Expect = 7e-41
 Identities = 139/432 (32%), Positives = 205/432 (47%), Gaps = 35/432 (8%)

Query: 20  VTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERVA 79
           VTI+RL  QG G+A     P+F    LPGE V   L  NK   A G LI + + S ERV 
Sbjct: 6   VTIDRLGAQGDGVARTEAGPVFAPFTLPGETV--SLAVNK---ANGTLISLKEASPERVE 60

Query: 80  PFCAHYAQ------CGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCS---D 130
           P C H+        CGGC LQH   A  ++H   A  + +V  A +S  L+  V +    
Sbjct: 61  PPCRHFGPDGVNGTCGGCTLQHASDA--LYH---AFKRNLVIDALRSKGLTPEVGALIIA 115

Query: 131 DQGYRRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLN---ALL 187
             G RRRA  +    +K  +L LG+ + QS  IV++  CP+  P + + L  +    A +
Sbjct: 116 RPGDRRRAAFTARRTEK--ELLLGYNQMQSHHIVSIGECPITSPGIVSRLATIRKIAAAM 173

Query: 188 SEWSQPERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQ 247
           +  ++P R+  +E   G     L L   G  +   Q+R    A   +  +  +   GE+ 
Sbjct: 174 ASSAEPFRITVLETDTG-----LDLAFEGLKLSDPQRRSAVDAVLGERGIARVSLNGEIV 228

Query: 248 HVQGEAPYCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNF 307
            V+   P  +  G  +S  P  F Q  R     M    L    V   +RV DLF G+G F
Sbjct: 229 -VEPLKPAIDFDGVTVSPPPGAFTQATRPAEDAMAKLVL--AHVGKAKRVADLFAGIGTF 285

Query: 308 TLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQ-INNVAFYQANLEQDMTSASWAQQKFAK 366
            L +A+ A+ V  VEG D  V+     A+  Q +  V   + +L +    A    + F  
Sbjct: 286 ALRIARTAR-VHAVEGDDRAVKALDFAARNTQGLKPVTAEKRDLFRRPMMAQ-ELKAFDA 343

Query: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426
           V+ DP RAGAE    +L+  G K++  VSCNP TLARD   L + G+R+  +  +D F  
Sbjct: 344 VVFDPPRAGAETQCHELARSGVKKIAAVSCNPVTLARDLSILTAAGYRITGVTPIDQFLW 403

Query: 427 TSHLESMALFVK 438
           ++H+E++A   K
Sbjct: 404 SAHVETVATLEK 415