Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., 23S rRNA 5-methyluridine methyltransferase (RefSeq) from Shewanella amazonensis SB2B

 Score =  376 bits (966), Expect = e-109
 Identities = 204/440 (46%), Positives = 280/440 (63%), Gaps = 5/440 (1%)

Query: 1   MARFFQPKKHSTLDTKHQ-PVTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENK 59
           MA+FF+ K +       +  + ++RLDH G+G+A    K +F+ GALPGE V +QLTE K
Sbjct: 1   MAQFFKAKPNQAKKLSQKIALKVQRLDHLGAGIAEHQGKVVFIPGALPGETVEVQLTEQK 60

Query: 60  SKYARGQLIKVLKPSAERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQ 119
             YAR +L +V + S +R  P C  Y +CGGCDLQHL    Q+ +K+QAL  ++ + A Q
Sbjct: 61  KNYARAKLQRVSEASPDRQTPPCPWYGKCGGCDLQHLSLPRQLEYKRQALGDIVSRSAAQ 120

Query: 120 SLALSAP-VCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNA 178
           ++ ++   V  D   YRRRARL+ + DK+T QL LGFR + SK++V +  C VL   L+ 
Sbjct: 121 TVTVNTDEVSGDSWHYRRRARLATLLDKETNQLALGFREEGSKSVVGIDSCAVLARPLSE 180

Query: 179 LLPDLNALLSEWSQPERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLY 238
           L+     LL+     +RLGH+EL +  N    VLR    L + D++ L+ FA + Q+ L 
Sbjct: 181 LISPFATLLNRLKGKQRLGHLELTQAANGLFAVLRVTAPLAQSDKKLLSAFADERQIALL 240

Query: 239 LMLEAGELQHVQG--EAPYCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQER 296
           L    GEL+ +    E PY +  G +L+F P +FIQVN  VNQ MV QA+NWL+V   ER
Sbjct: 241 LQGNEGELEFLSSGHELPYYQLDGLKLAFAPGNFIQVNGEVNQAMVAQAMNWLDVHAGER 300

Query: 297 VLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTS 356
           VLDLFCG+GNF+LPLAKQ   VVGVEGV EMV  A  NA +N ++N++FY A+L +D+ +
Sbjct: 301 VLDLFCGVGNFSLPLAKQGAEVVGVEGVPEMVAQAKQNAAINGLDNLSFYCADLSEDLAA 360

Query: 357 ASWAQQKFAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLE 416
             W   K  K+LLDPARAGA   +  L  +   +V+YVSCNPA+LARDS  L   G++L 
Sbjct: 361 EPWL-GKIDKLLLDPARAGAYESLKWLKKMKPAKVLYVSCNPASLARDSVLLFEAGYQLT 419

Query: 417 KLGMLDMFPHTSHLESMALF 436
           +LG++DMFP T H E MALF
Sbjct: 420 RLGLVDMFPQTHHSEGMALF 439