Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., 23S rRNA methyluridine methyltransferase (RefSeq) from Shewanella amazonensis SB2B

 Score =  119 bits (298), Expect = 2e-31
 Identities = 101/375 (26%), Positives = 172/375 (45%), Gaps = 31/375 (8%)

Query: 88  CGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKK 147
           C  C L       Q+  K+  L+ L+           APV   + G+R +A++ +M    
Sbjct: 11  CQSCRLMSKPVTEQLLEKEARLTHLLGGLPVDERL--APVSGPEFGFRNKAKMVVMGAAH 68

Query: 148 TQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQP-----ERLGHVEL- 201
              L +     Q    V+++HCP+    + ALL +L + +     P     +  G ++  
Sbjct: 69  APVLGIPGPDGQP---VDLSHCPLYPQDMQALLLELTSFVRRAGIPPYRVDKAKGELKFI 125

Query: 202 ------VKGDNTRVLVLRHLGAL--IEQDQQRL-TDF-----ASQNQLTLYLMLEAGELQ 247
                 V+G+     VLR   A+  IE++  +L  DF      S N   +++    GE +
Sbjct: 126 LLTRSAVRGEFMLRFVLRSKDAIPRIERELPKLLADFPAIKVVSVNLQPVHMARLEGEEE 185

Query: 248 HVQGEAPYCEET--GSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLG 305
               +A   +E   G  L   P  F Q N  V   +   A  W++    + + DLFCG+G
Sbjct: 186 IFLTQATRLDEVFNGVPLFIRPKSFFQTNPEVASRLYATAAKWVDELSPKSLWDLFCGVG 245

Query: 306 NFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFA 365
            F L  A ++  V G+E   E +  A  +A    ++N++F   +   D      AQ+   
Sbjct: 246 GFGLHCANESLPVTGIEIEAEAIDCAKTSAAAMGLDNLSFAALD-STDFAMGQQAQEVPE 304

Query: 366 KVLLDPARAG-AEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMF 424
            ++++P R G  E + ++LSA G + ++Y SCNP TLA+D    L  G+R+ ++ + DMF
Sbjct: 305 VIIVNPPRRGIGEELCERLSAFGPRAIIYSSCNPETLAKD--LALISGYRIARVQLFDMF 362

Query: 425 PHTSHLESMALFVKK 439
           PH+ H E + L +K+
Sbjct: 363 PHSDHFEVLCLLLKE 377