Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., tRNA (uracil-5-)-methyltransferase (RefSeq) from Shewanella amazonensis SB2B

 Score = 78.2 bits (191), Expect = 4e-19
 Identities = 52/190 (27%), Positives = 98/190 (51%), Gaps = 22/190 (11%)

Query: 269 HFIQVNRAVNQH---MVVQALNW-LEVSPQER--VLDLFCGLGNFTLPLAKQAQAVVGVE 322
           H+ QV  +  Q    + V+ L W L+ + Q    +L+L+CG GNF++ LA     V+  E
Sbjct: 179 HYKQVENSFTQPNAGVAVKMLEWALDATKQSSGDLLELYCGNGNFSIALAPNFGKVLATE 238

Query: 323 GVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAK-------------VLL 369
                V+ A +N ++N+++N+   + + E + T A   +++F +             + +
Sbjct: 239 LAKPSVEAAQYNIQVNKVSNLDIVRMSAE-EFTEAMKGEKRFNRLGDIDLQSYQCNTIFV 297

Query: 370 DPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSH 429
           DP RAG +    +L   G + ++Y+SCNP TL  D+  +LS+   + +  + D FP+T H
Sbjct: 298 DPPRAGLDDETVKL-VQGYENILYISCNPDTL-NDNLKVLSETHEVVRFALFDQFPYTHH 355

Query: 430 LESMALFVKK 439
            E+  +  ++
Sbjct: 356 TEAGVMLKRR 365