Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) from Rhodospirillum rubrum S1H

 Score =  121 bits (304), Expect = 4e-32
 Identities = 126/452 (27%), Positives = 195/452 (43%), Gaps = 47/452 (10%)

Query: 22  IERLDHQGSGLAFLH---KKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERV 78
           +  L  +G GLA      ++  +V GALPGE V ++    K      +L  V++ SAERV
Sbjct: 21  VHALGDRGDGLARPASGGERLFYVAGALPGERVRLRPQGRKGDGEIAELEAVIEASAERV 80

Query: 79  APFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRA 138
            P C H A CGGCDLQHLD       K+  + + +    G          S   G RRR 
Sbjct: 81  DPPCPHAALCGGCDLQHLDPPALADWKRDKVVRALAH-RGLGTVTVDQTLSLPAGTRRRL 139

Query: 139 RLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPERLGH 198
            + L    + +    GF  ++S  +++  HC +  P L AL+  L   L  +  P   G 
Sbjct: 140 SVGLRG--RARHGVCGFFARESHRLIDTPHCLLPTPPLAALMEHLRRALPGFLAPAAEGT 197

Query: 199 VELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLT-LYLMLEAGELQHVQ-GEAPYC 256
             + + +    L L    A     ++ L   A    L  L L +  G  + V    AP  
Sbjct: 198 ALMTETETGIDLRLDLPTAPELTGREALAALAEDADLARLTLTIAGGSEEPVALRRAPKL 257

Query: 257 EETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVL-DLFCGLGNFTLPLAKQA 315
              G+ +   P  F+Q +    + +    L   E  P   V+ DLFCGLG F LPLA + 
Sbjct: 258 TLGGTPVLPPPGPFLQPSVDGERALTDLVLAAFEDLPAGAVIADLFCGLGTFALPLAARG 317

Query: 316 QAVVG--VEGVDEMVQHATHNAKLNQINNVA---FYQANLEQDMTSASWAQQKFAKVLLD 370
             + G  +E        AT  A+  ++       F +  + +++  A W+      V+LD
Sbjct: 318 FKLRGWDIESSAIGALGATAPARAGKVQATTRDLFRRPLVAEEL--AGWSG-----VVLD 370

Query: 371 PARAGAEGIVDQLSALGA--------------------------KRVVYVSCNPATLARD 404
           P RAGA+  V+ L+A G                             +V VSC PA+ ARD
Sbjct: 371 PPRAGAKAQVEALAAAGPGPLGAPVRPSILGIVGGAPAAAATGPSVIVLVSCAPASFARD 430

Query: 405 SQSLLSQGFRLEKLGMLDMFPHTSHLESMALF 436
           +++L+  G+R++ +  +D F  + H+E +A F
Sbjct: 431 ARALVDGGYRIDWVRPVDQFTWSHHVEVVARF 462