Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 412 a.a., methyltransferase from Rhodopseudomonas palustris CGA009

 Score =  151 bits (381), Expect = 4e-41
 Identities = 121/428 (28%), Positives = 207/428 (48%), Gaps = 25/428 (5%)

Query: 18  QPVTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAER 77
           Q +TI++L H+G G++       +V  ALPGE V  +  +      R +L++V  PS +R
Sbjct: 3   QTLTIDQLGHRGDGVSLSQGGATYVPFALPGETVEAEPVQGHPD--RRKLLRVEVPSPDR 60

Query: 78  VAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRR 137
           VAPFC H+  CGGC +QHL        K+  + + + + AG  + +   + +   G   R
Sbjct: 61  VAPFCPHFGVCGGCAIQHLRDEPYRTWKRNLVIETLAQ-AGIDVPVDPLIDAHGAG---R 116

Query: 138 ARLSLMWDKKTQQ-LQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPERL 196
            R++L   + T   L++GF    S  I+ + HCP+L+P LN  L    AL    +   + 
Sbjct: 117 RRITLHARRGTHDILKVGFSATASHDIIGIDHCPILDPGLNGALEAAWALAEALTPVGKP 176

Query: 197 GHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYC 256
             +++   +N   + +R  G L  +    L+  A +++L    +    EL  ++   P  
Sbjct: 177 LDIQVTATENGLDIDVRGSGPLPPKMITSLSQLAEKHKLAR--LTRHSELVLLR-RPPVV 233

Query: 257 EETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQ 316
               ++++  P  F+Q      Q +   A+   ++   ++V DLFCG+G F L LA++A+
Sbjct: 234 AIGKAKVTLPPGAFLQATALGEQTLAELAM--AKLGRAKQVADLFCGVGPFALRLAEKAR 291

Query: 317 AVV---GVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQK---FAKVLLD 370
                     V  + + A   + L  +   A       +D+     A  +   F  VL D
Sbjct: 292 VFACDSDAPAVTALQKAAPATSGLKPVKAEA-------RDLFRRPLAPPELRDFDAVLFD 344

Query: 371 PARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHL 430
           P R GA+    QL+A     V+ VSCN  T ARD++ L+  G++LE++  +D F +T H+
Sbjct: 345 PPRQGAQAQAAQLAASRVPLVIAVSCNATTFARDAKLLIDGGYKLERVIPVDQFKYTPHV 404

Query: 431 ESMALFVK 438
           E +A+F K
Sbjct: 405 ELVAVFRK 412