Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., putative RNA methyltransferase from Phaeobacter inhibens DSM 17395

 Score =  135 bits (340), Expect = 2e-36
 Identities = 138/434 (31%), Positives = 186/434 (42%), Gaps = 50/434 (11%)

Query: 21  TIERLDHQGSGLAFLHKKPLFVDGALPGEEVL-----IQLTENKSKYARGQLIKVLKPSA 75
           TI RL HQG G+A   + PLF    LPGE V       QL++          I++  PS 
Sbjct: 10  TIIRLGHQGDGVA---EGPLFAPRTLPGETVSGIRDGHQLSD----------IRIENPSE 56

Query: 76  ERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALS-APVCSDDQGY 134
            RV   C HY  CGGC LQH         K   +   +   A Q L     P+ +     
Sbjct: 57  ARVQAPCRHYKSCGGCQLQHATDDFVAGWKIDIVRNAL---AAQGLETEFRPIHTSPPQS 113

Query: 135 RRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNAL-LSEWSQP 193
           RRRA LS+   KK      GF  + S  I  +  C +L P L + +P   AL +   S+ 
Sbjct: 114 RRRATLSVRRTKKGAMA--GFHGRASGVITEIPDCQLLAPQLLSAIPMAEALAMVGASRK 171

Query: 194 ERLGHVELVKGDNTRVLVL--RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQ- 250
             L     +      VLV   + L   +     ++ D     +LT    L   E    Q 
Sbjct: 172 APLSVTVTLSEVGVDVLVTNGKPLDGPLRIALAQVVDAHHIARLTWEDELIGMEQAPTQP 231

Query: 251 -GEAPYCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTL 309
            G A  C   G+        F+Q  R     ++    +   V   +R++DLF G G FTL
Sbjct: 232 FGPAHVCPPPGA--------FLQATRDGEAALLAAVKDC--VVGAKRIVDLFAGCGTFTL 281

Query: 310 PLAKQAQAVVGVEGVDEMVQ-------HATHNAKLNQINNVAFYQANLEQDMTSASWAQQ 362
           PLAK A+ V  VEG   M++        A    K+       F    L +D+     A  
Sbjct: 282 PLAKNAE-VHAVEGESSMLRALDAGWRQAKGLKKVTTETRDLFRNPLLAEDLNPFGAA-- 338

Query: 363 KFAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLD 422
            F   ++DP RAGAE  V QL     KRV YVSCNP T ARD++ L   G+RL+ + ++D
Sbjct: 339 -FDVAVIDPPRAGAEAQVTQLVTARTKRVAYVSCNPVTFARDAKILTDGGYRLDWVQVVD 397

Query: 423 MFPHTSHLESMALF 436
            F  +SH E  A F
Sbjct: 398 QFRWSSHCELAASF 411