Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 379 a.a., 23S rRNA methyluridine methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score =  104 bits (260), Expect = 4e-27
 Identities = 99/384 (25%), Positives = 167/384 (43%), Gaps = 33/384 (8%)

Query: 82  CAHYA--QCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRAR 139
           CA++   QC  C       + Q+  K   L+ L+   + +      PV   + G+R +A+
Sbjct: 3   CAYFDANQCLSCRHLKTPLSDQVAAKTATLAALLKDLSVEQWL--PPVVGPESGFRNKAK 60

Query: 140 LSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQP-----E 194
           + ++      Q  LG      +A V++  C +    +  LL  L A + +   P     +
Sbjct: 61  MVVLG--AAHQPILGLVSPSGEA-VSLCDCSLYPQDMQQLLHRLEAFVRQAGIPPYRVDK 117

Query: 195 RLGHVEL-------VKGDNTRVLVLRHLGAL--IEQDQQRLT------DFASQNQLTLYL 239
             G ++        V+G+     V+R   A+  IE++  RL          S N   +++
Sbjct: 118 AKGELKFILLTRSQVRGEYMLRFVMRSEQAIPRIERELPRLLAEHPEIKVVSVNLQPVHM 177

Query: 240 MLEAGELQHVQGEAPYCEE--TGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERV 297
            +  GE +    EA   EE   G  L   P  F Q +  V   + + A  W        +
Sbjct: 178 AILEGEEEIFLTEATRLEEEFNGVPLYIRPKSFFQTHPEVAAKLYLSARKWTRELAPTSI 237

Query: 298 LDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSA 357
            DLFCG+G F L  A +  A+ G+E   E +  A  +A+   ++ V F   +      S 
Sbjct: 238 WDLFCGVGGFGLHCASKEVALTGIEIEAEAIACAKMSAETLGLDKVRFTALD-STSFASD 296

Query: 358 SWAQQKFAKVLLDPARAG-AEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLE 416
           S  ++K   ++++P R G  E +   LS    K ++Y SCNP TLA+D   +   G+R+ 
Sbjct: 297 SRGEEKPELIIVNPPRRGIGEALCHSLSEFAPKAILYSSCNPKTLAKDLHCI--SGYRVT 354

Query: 417 KLGMLDMFPHTSHLESMALFVKKG 440
           K+ + DMFPHT H E + +  + G
Sbjct: 355 KVQLFDMFPHTDHFEVLVMLQRIG 378