Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., tRNA (uracil-5-)-methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score = 90.9 bits (224), Expect = 6e-23
 Identities = 96/365 (26%), Positives = 172/365 (47%), Gaps = 39/365 (10%)

Query: 101 QIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQS 160
           Q+  K+Q L+QL V F    L + A   S    YR RA   + W +        F + Q+
Sbjct: 14  QLDVKRQKLAQLFVDFETPELEVFA---SQKAHYRMRAEFRV-WHEGEDLYYYMFDKAQN 69

Query: 161 KAIVNVTHCPVLEPSLNALLPDLNALLSEWSQP---ERLGHVELVKGDNTRVLVL----R 213
           + I      P  +  +N ++P+L A L     P    +L  V+ +   +  +LV     +
Sbjct: 70  QKIRCEQFLPASQ-LINDMMPELMAALRP--NPVLRHKLFQVDFLSTLSGEILVSLLYHK 126

Query: 214 HLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEE---TGSRLSF--LPS 268
            L A  +++ Q L + A  ++  + ++  A + + V       E     G +L++  + +
Sbjct: 127 QLDAQWQEEAQALKE-ALSSKFKVDIIGRARKQKLVMDRDFVIESLPVNGKQLTYKQVEN 185

Query: 269 HFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMV 328
            F Q N  V   M+  A++    S  + +L+L+CG GNF++ LA+    V+  E     V
Sbjct: 186 SFTQPNGEVAIKMLEWAIDITRDSSGD-LLELYCGNGNFSIALAQNFNRVLATELAKPSV 244

Query: 329 QHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAK-------------VLLDPARAG 375
             A +N + NQI+N+   + + E D T A   ++ F +             + +DP RAG
Sbjct: 245 DSAQYNIEANQIDNLQIIRMSAE-DFTDALAKKRSFRRLEGVDLDSYDCNTIFVDPPRAG 303

Query: 376 AEGIVDQLSAL-GAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMA 434
            +   + LS + G +R++Y+SCNP TL  D+  +L +  ++ +  + D FP+T H+ES  
Sbjct: 304 LDD--NTLSMVQGYERILYISCNPNTLL-DNLKVLDKTHKITRFALFDQFPYTDHMESGV 360

Query: 435 LFVKK 439
           L  ++
Sbjct: 361 LLERR 365