Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 431 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Dechlorosoma suillum PS

 Score =  281 bits (719), Expect = 3e-80
 Identities = 169/426 (39%), Positives = 240/426 (56%), Gaps = 10/426 (2%)

Query: 22  IERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERVAPF 81
           IE LDH   G+  L  K +FV+GALPGE V   L   K  YA G++  VL+PS  RV P 
Sbjct: 6   IESLDHDARGVTRLEGKTVFVEGALPGETVEYALFREKPNYAVGEVSAVLRPSCARVPPR 65

Query: 82  CAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAG-QSLALSAPVCSDDQGYRRRARL 140
           C H+  CGGC +QHL+   Q+  KQ+ L   +   A  +   +  P+     GYR RARL
Sbjct: 66  CPHFGTCGGCSMQHLEPTAQVAAKQRLLENNLWHLARLKPEQVYNPIYGPTWGYRHRARL 125

Query: 141 SLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPERLGHVE 200
           ++    +++ + +GF  K+S  + ++  CP+L   ++ LL  L  L    S  +RL  VE
Sbjct: 126 TVRM-VESKGMLVGFHEKRSSYVADLHTCPILPAHVSDLLVPLRQLFVRLSIRDRLPQVE 184

Query: 201 LVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLM----LEAGELQHVQGE--AP 254
           +  G+   V+VLR L  L   D++ L  FA ++ +  +L       A     V G   + 
Sbjct: 185 IAVGEKCTVMVLRILEPLSGADEKLLRAFADEHGIVFFLQPKGPASAYRFHPVDGPDLSY 244

Query: 255 YCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQ 314
              E G  + F P+ F QVN  +NQ ++ +A+  L+  P ER+ DLFCGLGNFTLP+A+ 
Sbjct: 245 LLPEFGLEMRFSPTEFTQVNPGINQMLIRRAMRLLDPQPGERIADLFCGLGNFTLPIARS 304

Query: 315 AQAVVGVEGVDEMVQHATHNAKLNQI-NNVAFYQANLEQDMTSASWAQQKFAKVLLDPAR 373
              VVGVEG+ E+ + A  NA  N +  NV+F  ANL +    +  A   F K+L+DP R
Sbjct: 305 GARVVGVEGLKELTRRAEENAAANGLAANVSFGVANLFECTPKSLGALGHFDKMLIDPPR 364

Query: 374 AGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQ-GFRLEKLGMLDMFPHTSHLES 432
            GA  +V  L      R+VYVSCNP+TLARD+  L+ Q G+R    G+++MFPHTSH+ES
Sbjct: 365 EGAVEVVKALGEDSPGRIVYVSCNPSTLARDAAILVHQKGYRFSGAGIVNMFPHTSHVES 424

Query: 433 MALFVK 438
           +ALF K
Sbjct: 425 IALFEK 430