Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., Conserved alanine and valine and glycine rich protein from Mycobacterium tuberculosis H37Rv

 Score = 82.4 bits (202), Expect = 2e-20
 Identities = 103/419 (24%), Positives = 167/419 (39%), Gaps = 44/419 (10%)

Query: 29  GSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERVAPFC--AHYA 86
           GS +A    + +FV  ALPGE V  ++T  +  Y   +  +V+ PS +R+   C  A   
Sbjct: 22  GSCVAHHEGRVVFVRYALPGERVRARVTAQRGSYWHAEAFEVIDPSPDRIGSLCSIAGAD 81

Query: 87  QCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSD--DQGYRRRARLSLMW 144
             G CDL           K Q ++  + +    S    A   SD    G+R R RL +  
Sbjct: 82  GAGCCDLAFAAPEAARTLKAQVVANQLERLGRHSWQGEAQPLSDAGPTGWRIRVRLDVGA 141

Query: 145 DKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPERLGHVELVKG 204
           D++      GF R  S  +V    C  L   +      L+ L++    PE   +V L   
Sbjct: 142 DRRP-----GFHRYHSGELVTDLDCGQLPVGM------LDGLVAADWPPEAQLYVALDDD 190

Query: 205 DNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEETGSRLS 264
                   RH+   + Q  +  T        T+  ++E     H        +    R  
Sbjct: 191 GE------RHVVCSVRQGPRNRTR-------TVTNVVEGAYHAH--------QRVHRRSW 229

Query: 265 FLP-SHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEG 323
            +P + F Q +R           +W + +P     DL+ G G F   L +       V  
Sbjct: 230 RVPVTAFWQAHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLT 289

Query: 324 VD-EMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAKV-LLDPARAGA-EGIV 380
           VD   +      A L  +  V     ++ + +      Q   A + +LDP R+GA   +V
Sbjct: 290 VDTSRLASGAARAALVDLPQVEVVTGSVRRVLA----VQPAGADLAVLDPPRSGAGREVV 345

Query: 381 DQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMALFVKK 439
           D L+  G  R++++ C  A+ ARD       G+ +EK+ + D FP T ++E +AL  +K
Sbjct: 346 DLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRK 404