Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 379 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Pantoea sp. MT58

 Score =  104 bits (259), Expect = 5e-27
 Identities = 102/382 (26%), Positives = 165/382 (43%), Gaps = 34/382 (8%)

Query: 82  CAHYA--QCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRAR 139
           CA Y   +C  C         Q+  KQ  L QL+ +      A   PV S  Q +R +A+
Sbjct: 3   CALYDANRCRSCQWLEKPYPIQLSDKQSMLEQLLAE--QPVTAWLPPVTSPQQAFRNKAK 60

Query: 140 LSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPV----LEPSLNALLPDL-NALLSEWSQPE 194
           + +      ++  LG   +  +A V++  CP+     +P   AL P +  A L+ ++   
Sbjct: 61  MVV--SGSVERPVLGLIHRDGEA-VDLCDCPLYPASFQPVFTALKPFIARAGLTPYNVAR 117

Query: 195 RLGHVELV------KGDNTRVLVLR------HLGALIEQDQQRLTDFA--SQNQLTLYLM 240
           + G ++ +      +G      VLR       L A +   QQ+L   A  S N   +++ 
Sbjct: 118 KRGELKFLLITESQQGGIMLRFVLRSTAKLEQLRAALPWLQQQLPQLAVISANIQPVHMA 177

Query: 241 LEAGELQHVQGEAPYCEET--GSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVL 298
           +  GE +     A    E   G  L   P  F Q N  V   +   A +W+   P   + 
Sbjct: 178 ILEGEEEIALTPAQSLAENFNGVPLWIRPQSFFQTNPQVASALYATARDWVRALPVNSMW 237

Query: 299 DLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSAS 358
           DLFCG+G F L  A     + G+E   E ++ A  +A++  +  V F   +     T   
Sbjct: 238 DLFCGVGGFGLHCATPEMELTGIEISAEAIKCAQRSAEMLGLEKVQFAALDSTSFATGRD 297

Query: 359 WAQQKFAKVLLDPARAG-AEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEK 417
              Q    VL++P R G  E + D LS +    ++Y SCNP T+ +D   L    + + K
Sbjct: 298 AVPQ---LVLVNPPRRGIGEALCDYLSQMAPDYLLYSSCNPQTMVQDIARL--SAYEVTK 352

Query: 418 LGMLDMFPHTSHLESMALFVKK 439
           + + DMFPHT+H E + L  ++
Sbjct: 353 VQLFDMFPHTAHFEVLTLLTRR 374