Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., RNA methyltransferase, TrmA family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  107 bits (266), Expect = 8e-28
 Identities = 99/383 (25%), Positives = 169/383 (44%), Gaps = 32/383 (8%)

Query: 82  CAHY--AQCGGCDLQHLDRAGQIHHKQQALSQLMVKFA-GQSLALSAPVCSDDQGYRRRA 138
           C ++   QC  C    L    Q+  K Q L QL+  F    +     PV  +D G+R +A
Sbjct: 3   CGYFERGQCQSCRHIKLPMVQQLAAKTQELQQLLAPFVVSTNTQFLPPVVGEDSGFRNKA 62

Query: 139 RLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPE---- 194
           ++ ++       L  G      +A V++  C +    + ALL  L   + +   P     
Sbjct: 63  KMVVLGAAHAPVL--GIVSPNGEA-VSLCDCLLYPADMQALLYRLERFVQQAGIPPYRID 119

Query: 195 ----RLGHVEL----VKGDNTRVLVLRHLGAL--IEQDQQRLT------DFASQNQLTLY 238
                L ++ L    V+G+     VLR   A+  IE++   L       +  S N   ++
Sbjct: 120 KAKGELKYILLTRSQVRGEYMLRFVLRSPDAIARIERELPALMAEYPQINVVSVNIQPIH 179

Query: 239 LMLEAGELQHVQGEAPYCEETGSRLSFL--PSHFIQVNRAVNQHMVVQALNWLEVSPQER 296
           + +  G+ +    E    EE  + +     P  F Q N  V   +   A  W+     + 
Sbjct: 180 MAILEGDEEIFLTENTRLEERFNDVPLFIRPKSFFQTNPHVAAKLYQTAREWVGEFAPKS 239

Query: 297 VLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTS 356
           + DLFCG+G F L  A +   + G+E   E +  A  +A++  ++NV F   +   D   
Sbjct: 240 LWDLFCGVGGFGLHCASKDIPLTGIEIEAEAIACAKMSAQMMGLDNVQFMALD-STDFAK 298

Query: 357 ASWAQQKFAKVLLDPARAG-AEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRL 415
              A  K   ++++P R G  E + D LS    + ++Y SCNP TLA+D   +  +G++L
Sbjct: 299 GDAAATKPDLIIVNPPRRGIGESLCDALSEFAPRAILYSSCNPKTLAKDLVHI--RGYQL 356

Query: 416 EKLGMLDMFPHTSHLESMALFVK 438
            ++ + D+FPH+ H E +A+ VK
Sbjct: 357 TRVQLFDLFPHSDHFEVLAMLVK 379