Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., tRNA (uracil-5-)-methyltransferase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 81.6 bits (200), Expect = 4e-20
 Identities = 86/361 (23%), Positives = 161/361 (44%), Gaps = 39/361 (10%)

Query: 101 QIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQS 160
           Q+  K+  L Q   +F   S+ + A   SD + YR RA   + W +        F     
Sbjct: 14  QLEAKRIKLEQAFAQFETPSIEVFA---SDPEHYRMRAEFRV-WHEGDDLYYYMF----D 65

Query: 161 KAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPERLGHVELVKGDNTRVLVLRHLGALIE 220
           KA+ +   C    P+   +   + AL++E      L H +L + D    L    L +L+ 
Sbjct: 66  KALNDKVRCDQYLPASTLINEMMAALIAELKPNPSLRH-KLFQVDFLSTLSGEILVSLLY 124

Query: 221 Q----DQQRLTDFASQNQLTLYL---MLEAGELQHVQGEAPYCEETGSRLSFLPSHFIQV 273
                DQ R    A + +L+      ++     Q +  +  +  E+  +++    H+ Q+
Sbjct: 125 HRQLDDQWRAEAIALKAKLSSQFKVNIIGRARKQKIDLDKDFVVES-LQVNDKVFHYKQI 183

Query: 274 NRAVNQ---HMVVQALNW---LEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEM 327
             +  Q    + ++ L W   +  + Q  +L+L+CG GNF++ LA+    V+  E     
Sbjct: 184 ENSFTQPNAKVAIKMLEWAIDVTQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPS 243

Query: 328 VQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAK-------------VLLDPARA 374
           V  A +N ++N I+N+   + + E + + A   ++ F +             + +DP RA
Sbjct: 244 VDAAQYNIEINGIDNLQIIRMSAE-EFSDAMAKKRSFRRLEGIDLDSYLCNTIFVDPPRA 302

Query: 375 GAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMA 434
           G +     L   G +R++Y+SCNP TL +D+   L +  ++ +  + D FP+T H+E+  
Sbjct: 303 GIDPATLDL-VQGYERILYISCNPDTL-KDNLQQLYKTHKVTRFALFDQFPYTDHMETGV 360

Query: 435 L 435
           L
Sbjct: 361 L 361