Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase from Klebsiella michiganensis M5al

 Score =  409 bits (1050), Expect = e-118
 Identities = 221/436 (50%), Positives = 283/436 (64%), Gaps = 7/436 (1%)

Query: 1   MARFFQPKKHSTLDTKHQPVTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKS 60
           MA+F+  K+  T   +   VT+  LD  G G+A    K LFV G LP E+  + L E+K 
Sbjct: 1   MAQFYSAKRRVTT-RQIITVTVNDLDPFGQGVAHHQGKALFVSGLLPQEQAEVVLVEDKK 59

Query: 61  KYARGQLIKVLKPSAERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQS 120
           +YAR Q+ + L  S +R AP C H+  CGGC  QH     Q   K+ AL++LM +     
Sbjct: 60  QYARAQVKRRLSDSPQRQAPRCPHFGICGGCQQQHASVELQQQSKRAALARLMKRDVDDI 119

Query: 121 LALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALL 180
           +A S        GYRRRARLSL +  KTQQLQ+GFR+  S  IV+V  CPVL P+  ALL
Sbjct: 120 IAASP------WGYRRRARLSLNYQPKTQQLQIGFRKANSSEIVDVVQCPVLVPAFGALL 173

Query: 181 PDLNALLSEWSQPERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLM 240
           P +   LS      +LGHVELV+ DN  ++VLRH  AL   D+++L  F+  + L+LYL 
Sbjct: 174 PAVRECLSGLQSLRQLGHVELVQADNGPLMVLRHTAALPAADKEKLERFSQSHGLSLYLA 233

Query: 241 LEAGELQHVQGEAPYCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDL 300
            ++  L+H++GEAP+    G RL F P  FIQVN  VNQ MV  AL WL++ PQ+RVLDL
Sbjct: 234 PQSEILEHIRGEAPWYTSDGLRLVFSPRDFIQVNDGVNQLMVRTALEWLDIQPQDRVLDL 293

Query: 301 FCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWA 360
           FCG+GNFTLPLAK+A  VVGVEGV  +V  A  NA LN ++NV F+  NLE+D+T  +WA
Sbjct: 294 FCGMGNFTLPLAKRAAQVVGVEGVPALVVKARENAALNALHNVTFFHENLEEDVTRQAWA 353

Query: 361 QQKFAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGM 420
           +  F KVLLDPARAGA G++  +  L  +RVVYVSCNPATLARDS  LL  G+ +++L M
Sbjct: 354 KHGFDKVLLDPARAGAAGVMLHIIKLAPRRVVYVSCNPATLARDSDVLLQAGYTIQRLAM 413

Query: 421 LDMFPHTSHLESMALF 436
           LDMFPHT HLESM LF
Sbjct: 414 LDMFPHTGHLESMVLF 429