Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 376 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase from Klebsiella michiganensis M5al

 Score = 99.0 bits (245), Expect = 2e-25
 Identities = 95/383 (24%), Positives = 158/383 (41%), Gaps = 35/383 (9%)

Query: 82  CAHY--AQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRAR 139
           CA Y   +C  C    L  + Q+  K   L  L+           AP C  + G+R +A+
Sbjct: 3   CALYDAGRCRSCQWLELPISQQLADKMADLRALLAD--APVAEWCAPACGPESGFRNKAK 60

Query: 140 LSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPV----LEPSLNALLPDL-NALLSEWSQPE 194
           + +      ++  LG   +   A  ++T CP+      P   AL P +  A L+ +    
Sbjct: 61  MVV--SGSVERPLLGMLHRDG-APEDLTDCPLYPQSFAPVFAALKPFIARAGLTPYHVAR 117

Query: 195 RLGHVE----------------LVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLY 238
           R G ++                 V    TR+  LR     ++    +L    +  Q    
Sbjct: 118 RRGELKYILLTESRLDGGMMLRFVLRSETRLTQLRAALPALQALLPQLKVITANIQPVHM 177

Query: 239 LMLEAGELQHVQGEAPYCEE-TGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERV 297
            ++E  +   +  +    E   G  L   P  F Q N  V   +   A +W+   P   +
Sbjct: 178 AIMEGPQEIFLTDQQALAENFNGVPLWIRPQSFFQTNPTVASRLYATARDWVRQLPVNHM 237

Query: 298 LDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSA 357
            DLFCG+G F L  A     + G+E   E +  A  +A    ++N+ F   +  Q  T  
Sbjct: 238 WDLFCGVGGFGLHCASPEMRLTGIEIAPEAIACAKQSAAELGLHNLHFQALDSTQFATGE 297

Query: 358 SWAQQKFAKVLLDPARAG-AEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLE 416
                    VL++P R G  + +   LS +  + ++Y SCN  T+A+D   L   G+R+E
Sbjct: 298 GEIPD---LVLVNPPRRGIGDELCAYLSRMAPEFIIYSSCNARTMAKDIARL--SGYRIE 352

Query: 417 KLGMLDMFPHTSHLESMALFVKK 439
           ++ + DMFPHT+H E + L V++
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVRE 375