Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Klebsiella michiganensis M5al

 Score = 87.0 bits (214), Expect = 9e-22
 Identities = 88/362 (24%), Positives = 164/362 (45%), Gaps = 32/362 (8%)

Query: 101 QIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQS 160
           Q+  K   L ++M  F+ Q   +     S    YR RA   L W        + F + Q+
Sbjct: 14  QLAEKVVRLQKMMAPFSAQVPEVFRSPISH---YRMRAEFRL-WHDGDDLYHIMFDQ-QT 68

Query: 161 KAIVNVTHCPVLEPSLNALLPD-LNALLSEWSQPERLGHVE-LVKGDNTRVLVLRHLGAL 218
           K+ + V   P     +N L+   +  +        +L  V+ L    N  V+ L +   L
Sbjct: 69  KSRIRVDTFPAASELINQLMAAVIEGVRDNPVLRHKLFQVDYLTTLSNQAVISLLYHKKL 128

Query: 219 IE---QDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----GSRLSF--LPSH 269
            +   Q  +R  D      L ++L+  A + + ++ +  Y +E     G  + +  + + 
Sbjct: 129 DDEWRQQAERFRDALRAQNLNVHLIGRATKTK-IELDQDYIDERLPVGGREMIYRQVENS 187

Query: 270 FIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQ 329
           F Q N A+N  M+  A++  + +  + +L+L+CG GNF+L LA+  + V+  E     V 
Sbjct: 188 FTQPNAAMNVQMLEWAIDATKDATGD-LLELYCGNGNFSLALARNFERVLATEIAKPSVA 246

Query: 330 HATHNAKLNQINNVAFYQANLEQDMTSASWAQQ------------KFAKVLLDPARAGAE 377
            A +N   N I+NV   + + E+   + +  +Q            +   + +DP R+G +
Sbjct: 247 AAQYNIAANHIDNVQIIRMSAEEFTQAMNGVRQFNRLQDIDLKSYQCETIFVDPPRSGLD 306

Query: 378 GIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMALFV 437
              +++      R++Y+SCNP TL ++ ++ LS+   + +L + D FP+T H+E   L  
Sbjct: 307 SETEKM-VQAYPRILYISCNPETLCQNLET-LSETHEIARLALFDQFPYTHHMECGVLLT 364

Query: 438 KK 439
           KK
Sbjct: 365 KK 366