Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., tRNA/tmRNA (uracil-C(5))-methyltransferase from Enterobacter sp. TBS_079

 Score = 87.8 bits (216), Expect = 5e-22
 Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 15/182 (8%)

Query: 270 FIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQ 329
           F Q N A+N  M+  AL   E S  + +L+L+CG GNF+L LA+  + V+  E     V 
Sbjct: 188 FTQPNAAMNVQMLDWALKATEGSKGD-LLELYCGNGNFSLALARNFERVLATEIAKPSVA 246

Query: 330 HATHNAKLNQINNVAFYQANLEQDMTSASWAQQ------------KFAKVLLDPARAGAE 377
            A +N   N I+NV   + + E+   + +  +Q            +   + +DP R+G +
Sbjct: 247 AAQYNIAANHIDNVQIIRMSAEEFTQAMNGVRQFNRLEGIDLKSYQCETIFVDPPRSGLD 306

Query: 378 GIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMALFV 437
              +++      R++Y+SCNP TL ++ ++ LSQ   +E+L + D FP+T H+E   L  
Sbjct: 307 SETEKM-VQAYPRILYISCNPETLCKNLET-LSQTHNVERLALFDQFPYTHHMECGVLLT 364

Query: 438 KK 439
            K
Sbjct: 365 AK 366