Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC from Enterobacter sp. TBS_079

 Score = 98.6 bits (244), Expect = 3e-25
 Identities = 100/383 (26%), Positives = 159/383 (41%), Gaps = 37/383 (9%)

Query: 82  CAHY--AQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRAR 139
           CA Y   +C  C       + Q+  K   L  L+   A       APV   +QG+R +A+
Sbjct: 3   CALYDAGRCRSCQWIEQPVSQQLTAKMADLQHLLADHAVGEWC--APVSGPEQGFRNKAK 60

Query: 140 LSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPV----LEPSLNALLP-------------- 181
           + +    +   L +  R    +   ++T CP+      P   AL P              
Sbjct: 61  MVVSGSVEKPLLGMLHREGTPE---DLTDCPLYPASFAPVFAALKPFIARAGLTPYNVAR 117

Query: 182 ---DLNALLSEWSQPERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLY 238
              +L  LL   SQ +    +  V     +V  LR     ++Q   +LT   +  Q  ++
Sbjct: 118 KRGELKYLLLTESQVDGSMMLRFVLRSEAKVEQLRAALPWLQQQLPQLTVITANIQ-PVH 176

Query: 239 LMLEAGELQHVQGEAPYCEETGSR--LSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQER 296
           + +  GE +    E     ET +   L   P  F Q N  V   +   A +W+       
Sbjct: 177 MAIMEGEREIFFTEQHALAETFNDVPLWIRPQSFFQTNPTVASALYATARDWVRALNIHH 236

Query: 297 VLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTS 356
           + DLFCG+G F L  A     + G+E   E +  A  +A    +  + F   +  Q  T 
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEISAEAIACARQSAAELGLTRLHFQALDSTQFATG 296

Query: 357 ASWAQQKFAKVLLDPARAG-AEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRL 415
                +    VL++P R G  + + D LS +    +VY SCN  T+A+D  +L   G+R+
Sbjct: 297 QDNVPE---LVLVNPPRRGIGKALCDYLSQMAPDYIVYSSCNAQTMAKDIATL--PGYRI 351

Query: 416 EKLGMLDMFPHTSHLESMALFVK 438
           E++ + DMFPHT+H E + L VK
Sbjct: 352 ERVQLFDMFPHTAHYEVLTLLVK 374