Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., 23S rRNA methyluridine methyltransferase (RefSeq) from Shewanella sp. ANA-3

 Score =  110 bits (275), Expect = 8e-29
 Identities = 100/383 (26%), Positives = 164/383 (42%), Gaps = 32/383 (8%)

Query: 82  CAHY--AQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLA-LSAPVCSDDQGYRRRA 138
           C ++   QC  C    L  A Q+  K   L QL+  F  ++      PV  D  G+R +A
Sbjct: 7   CGYFERGQCQSCRHIKLPMAQQLAAKNLELQQLLAPFVDKTEPQFLPPVVGDSSGFRNKA 66

Query: 139 RLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQP----- 193
           ++  +       L +      S   V++  C +    + ALL  L   + +   P     
Sbjct: 67  KMVALGAAHAPVLGIV---SPSGEAVSLCDCLLYPTDMQALLHRLERFVQQAGIPPYRVD 123

Query: 194 ERLGHVEL-------VKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLM-LEAGE 245
           +  G ++        V+G+     VLR   A+   +++  T  A   Q+ +  + L+   
Sbjct: 124 KAKGELKFILLTRSQVRGEYMLRFVLRSRDAIARIERELPTLMAEYPQIKVVSVNLQPVH 183

Query: 246 LQHVQGEAPYCEETGSRLS---------FLPSHFIQVNRAVNQHMVVQALNWLEVSPQER 296
           +  ++GE        +RL            P  F Q N  V   +   A  W+       
Sbjct: 184 MAILEGEEEIFLTENTRLEERFNDVPLFIRPKSFFQTNPQVAAKLYQTAREWVADFAPAS 243

Query: 297 VLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTS 356
           + DLFCG+G F L  A +   + G+E   E +  A  +A+L  ++ V F   +   D   
Sbjct: 244 LWDLFCGVGGFGLHCAAKDIPLTGIEIEAEAIACAKMSAQLMGLDKVEFMALD-STDFAK 302

Query: 357 ASWAQQKFAKVLLDPARAG-AEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRL 415
              AQ K   ++++P R G  E +   LS    K ++Y SCNP TLA+D   +  +G+RL
Sbjct: 303 GEAAQTKPELIIVNPPRRGIGESLCHSLSEFAPKAILYSSCNPKTLAKDLGHI--RGYRL 360

Query: 416 EKLGMLDMFPHTSHLESMALFVK 438
            K+ + D+FPH+ H E +AL VK
Sbjct: 361 TKVQLFDLFPHSDHFEVLALLVK 383