Pairwise Alignments

Query, 440 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., tRNA (uracil-5-)-methyltransferase (RefSeq) from Shewanella sp. ANA-3

 Score = 81.6 bits (200), Expect = 4e-20
 Identities = 51/190 (26%), Positives = 98/190 (51%), Gaps = 22/190 (11%)

Query: 269 HFIQVNRAVNQ---HMVVQALNW---LEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVE 322
           H+ Q+  +  Q    + ++ L W   +  + Q  +L+L+CG GNF++ LA+    V+  E
Sbjct: 179 HYKQIENSFTQPNAKVAIKMLEWAIDVTQNSQGDLLELYCGNGNFSIALAQNFNRVLATE 238

Query: 323 GVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAK-------------VLL 369
                V  A +N ++N I+N+   + + E + + A   ++ F +             + +
Sbjct: 239 LAKPSVDAAQYNIEVNNIDNLQIIRMSAE-EFSDAMAKKRSFRRLEGIDLDSYVCNTIFV 297

Query: 370 DPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSH 429
           DP RAG +    +L   G +R++Y+SCNP TL +D+   L+Q  ++ +  + D FP+T H
Sbjct: 298 DPPRAGIDPATLEL-VRGYERILYISCNPDTL-KDNLQQLNQTHKVTRFALFDQFPYTDH 355

Query: 430 LESMALFVKK 439
           +E+  L  ++
Sbjct: 356 METGVLLERR 365